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Report for CCDS2411.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2411.1 Public Homo sapiens 2 PNKD 24 110 108 CCDS HistoryNCBI Gene:25953Re-query CCDS DB by CCDS ID:2411.1Re-query CCDS DB by GeneID:25953See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2411.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000273077.9 ENSP00000273077.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000273077.9Link to Ensembl Protein Viewer:ENSP00000273077.4Re-query CCDS DB by Nucleotide ID:ENST00000273077Re-query CCDS DB by Protein ID:ENSP00000273077
Original member Current member NCBI NM_015488.5 NP_056303.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015488.5Link to Protein Sequence:NP_056303.3Re-query CCDS DB by Nucleotide ID:NM_015488Re-query CCDS DB by Protein ID:NP_056303Link to BLAST:NP_056303.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056303.3 385 Q8N490-1 385 100% 0 0

Chromosomal Locations for CCDS 2411.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 218270536 218270602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218271381 218271549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218339783 218339898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218340029 218340141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218340728 218340786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218341534 218341626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218341981 218342144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218343500 218343586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218344455 218344570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218344808 218344981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1158 nt):
ATGGCGGCGGTGGTAGCTGCTACGGCGCTGAAGGGCCGGGGGGCGAGAAATGCCCGCGTCCTCCGGGGGA
TTCTCGCAGGAGCCACAGCTAACAAGGCTTCTCATAACAGGACCCGGGCCCTGCAAAGCCACAGCTCCCC
AGAGGGCAAGGAGGAACCTGAACCCCTATCCCCGGAGCTGGAATACATTCCCAGAAAGAGGGGCAAGAAC
CCCATGAAAGCTGTGGGACTGGCCTGGTACAGCCTGTACACCCGCACCTGGCTCGGGTACCTCTTCTACC
GACAGCAGCTGCGCAGGGCTCGGAATCGCTACCCTAAAGGCCACTCGAAAACCCAGCCCCGCCTCTTCAA
TGGAGTGAAGGTGCTTCCCATCCCTGTCCTCTCGGACAACTACAGCTACCTCATCATCGACACCCAGGCC
CAGCTGGCTGTGGCTGTGGACCCTTCAGACCCTCGGGCTGTGCAGGCTTCCATTGAAAAGGAAGGGGTCA
CCTTGGTCGCCATTCTGTGTACTCACAAGCACTGGGACCACAGTGGAGGGAACCGTGACCTCAGCCGGCG
GCACCGGGACTGTCGGGTGTACGGGAGCCCTCAGGACGGCATCCCCTACCTCACCCATCCCCTGTGTCAT
CAAGATGTGGTCAGCGTGGGACGGCTTCAGATCCGGGCCCTGGCTACACCTGGCCACACACAAGGCCATC
TGGTCTACCTACTGGATGGGGAGCCCTACAAGGGTCCCTCCTGCCTCTTCTCAGGGGACCTGCTCTTCCT
CTCTGGCTGTGGGCGGACCTTTGAGGGCAATGCAGAGACCATGCTGAGCTCACTGGACACTGTGCTGGGG
CTAGGGGATGACACCCTTCTGTGGCCTGGTCATGAGTATGCAGAGGAGAACCTGGGCTTTGCAGGTGTGG
TGGAGCCCGAGAACCTGGCCCGGGAGAGGAAGATGCAGTGGGTGCAGCGGCAGCGGCTGGAGCGCAAGGG
CACGTGCCCATCTACCCTGGGAGAGGAGCGCTCCTACAACCCGTTCCTGAGAACCCACTGCCTGGCGCTA
CAGGAGGCTCTGGGGCCGGGGCCGGGCCCCACTGGGGATGATGACTACTCCCGGGCCCAGCTCCTGGAAG
AGCTCCGCCGGCTGAAGGATATGCACAAGAGCAAGTGA

Translation (385 aa):
MAAVVAATALKGRGARNARVLRGILAGATANKASHNRTRALQSHSSPEGKEEPEPLSPELEYIPRKRGKN
PMKAVGLAWYSLYTRTWLGYLFYRQQLRRARNRYPKGHSKTQPRLFNGVKVLPIPVLSDNYSYLIIDTQA
QLAVAVDPSDPRAVQASIEKEGVTLVAILCTHKHWDHSGGNRDLSRRHRDCRVYGSPQDGIPYLTHPLCH
QDVVSVGRLQIRALATPGHTQGHLVYLLDGEPYKGPSCLFSGDLLFLSGCGRTFEGNAETMLSSLDTVLG
LGDDTLLWPGHEYAEENLGFAGVVEPENLARERKMQWVQRQRLERKGTCPSTLGEERSYNPFLRTHCLAL
QEALGPGPGPTGDDDYSRAQLLEELRRLKDMHKSK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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