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Report for CCDS13040.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13040.1 Public Homo sapiens 20 GNRH2 24 110 108 CCDS HistoryNCBI Gene:2797Re-query CCDS DB by CCDS ID:13040.1Re-query CCDS DB by GeneID:2797See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13040.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000245983.6 ENSP00000245983.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000245983.6Link to Ensembl Protein Viewer:ENSP00000245983.2Re-query CCDS DB by Nucleotide ID:ENST00000245983Re-query CCDS DB by Protein ID:ENSP00000245983
Original member Current member NCBI NM_001310220.2 NP_001297149.1 Accepted alive Link to Nucleotide Sequence:NM_001310220.2Link to Protein Sequence:NP_001297149.1Re-query CCDS DB by Nucleotide ID:NM_001310220Re-query CCDS DB by Protein ID:NP_001297149Link to BLAST:NP_001297149.1
Original member Current member NCBI NM_001501.2 NP_001492.1 Accepted alive Link to Nucleotide Sequence:NM_001501.2Link to Protein Sequence:NP_001492.1Re-query CCDS DB by Nucleotide ID:NM_001501Re-query CCDS DB by Protein ID:NP_001492Link to BLAST:NP_001492.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001297149.1 120 O43555-1 120 100% 0 0
NP_001492.1 120 O43555-1 120 100% 0 0

Chromosomal Locations for CCDS 13040.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 3044415 3044568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3044679 3044836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3045686 3045736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (363 nt):
ATGGCCAGCTCCAGGCGAGGCCTCCTGCTCCTGCTGCTGCTGACTGCCCACCTTGGACCCTCAGAGGCTC
AGCACTGGTCCCATGGCTGGTACCCTGGAGGAAAGCGAGCCCTCAGCTCAGCCCAGGATCCCCAGAATGC
CCTTAGGCCCCCAGGAAGGGCCCTGGACACTGCAGCAGGCAGCCCAGTCCAGACTGCCCATGGCCTCCCA
AGTGATGCCCTGGCTCCCCTGGACGACAGCATGCCCTGGGAGGGCAGGACCACGGCCCAGTGGTCCCTTC
ACAGGAAGCGACACCTGGCACGGACACTGCTGACCGCAGCCCGAGAGCCCCGCCCCGCCCCGCCATCCTC
CAATAAAGTGTGA

Translation (120 aa):
MASSRRGLLLLLLLTAHLGPSEAQHWSHGWYPGGKRALSSAQDPQNALRPPGRALDTAAGSPVQTAHGLP
SDALAPLDDSMPWEGRTTAQWSLHRKRHLARTLLTAAREPRPAPPSSNKV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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