NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS56200.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56200.1 Public Homo sapiens 20 NPEPL1 24 110 108 CCDS HistoryNCBI Gene:79716Re-query CCDS DB by CCDS ID:56200.1Re-query CCDS DB by GeneID:79716See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56200.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000525967.5 ENSP00000434810.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000525967.5Link to Ensembl Protein Viewer:ENSP00000434810.1Re-query CCDS DB by Nucleotide ID:ENST00000525967Re-query CCDS DB by Protein ID:ENSP00000434810
Original member Current member NCBI NM_001204872.2 NP_001191801.1 Accepted alive Link to Nucleotide Sequence:NM_001204872.2Link to Protein Sequence:NP_001191801.1Re-query CCDS DB by Nucleotide ID:NM_001204872Re-query CCDS DB by Protein ID:NP_001191801Link to BLAST:NP_001191801.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001191801.1 495 Q8NDH3-4 495 100% 0 0

Chromosomal Locations for CCDS 56200.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 58691765 58691830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 58693737 58693922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 58694422 58694592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 58698684 58698773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 58699197 58699278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 58701016 58701158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 58707123 58707200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 58712479 58712579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 58713420 58713543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 58713917 58714093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 58714560 58714670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 58715168 58715326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1488 nt):
ATGGAACTACATGGAGGTAACAGAGGAGGGTACCAACCAAAGGCCCTTGAGCAATCAGGATGTTGGCTCT
GGCAGGCTGCCCTGAGCACGCTCAACCCCAACCCCACGGACAGCTGTCCCCTCTACCTGAACTACGCCAC
CGTGGCTGCCCTGCCCTGCAGGGTGAGCCGGCACAACAGCCCCTCGGCCGCCCACTTCATCACGCGGCTG
GTGCGGACCTGCCTGCCGCCCGGAGCGCATCGCTGCATTGTGATGGTCTGCGAGCAGCCGGAGGTCTTTG
CTTCCGCCTGTGCCCTGGCCCGGGCCTTCCCGCTGTTCACCCACCGCTCAGGTGCCTCTCGGCGCTTGGA
GAAGAAGACGGTCACCGTGGAGTTTTTCCTGGTGGGACAAGACAACGGGCCGGTGGAGGTGTCCACATTG
CAGTGCTTAGCGAATGCCACAGACGGCGTGCGGCTAGCAGCCCGCATCGTGGACACACCCTGCAATGAGA
TGAACACCGACACCTTCCTCGAGGAGATTAACAAAGTTGGAAAGGAGCTGGGGATCATCCCAACCATCAT
CCGGGATGAGGAACTGAAGACGAGAGGATTTGGAGGAATCTATGGGGTTGGCAAAGCCGCCCTGCATCCC
CCAGCCCTGGCCGTCCTCAGCCACACCCCAGATGGAGCCACGCAGACCATCGCCTGGGTGGGCAAAGGCA
TCGTCTATGACACTGGAGGCCTCAGCATCAAAGGGAAGACTACCATGCCGGGGATGAAGCGAGACTGCGG
GGGTGCTGCGGCCGTCCTGGGGGCCTTCAGAGCCGCAATCAAGCAGGGTTTCAAAGACAACCTCCACGCT
GTGTTCTGCTTGGCTGAGAACTCGGTGGGGCCCAATGCGACAAGGCCAGATGACATCCACCTGCTGTACT
CAGGGAAGACGGTGGAAATCAACAACACGGATGCCGAGGGCAGGCTGGTGCTGGCAGATGGCGTGTCCTA
TGCTTGCAAGGACCTGGGGGCCGACATCATCCTGGACATGGCCACCCTGACCGGGGCTCAGGGCATTGCC
ACAGGGAAGTACCACGCCGCGGTGCTCACCAACAGCGCTGAGTGGGAGGCCGCCTGTGTGAAGGCGGGCA
GGAAGTGTGGGGACCTGGTGCACCCGCTGGTCTACTGCCCCGAGCTGCACTTCAGCGAGTTCACCTCAGC
TGTGGCGGACATGAAGAACTCAGTGGCGGACCGAGACAACAGCCCCAGCTCCTGTGCTGGCCTCTTCATC
GCCTCACACATCGGCTTCGACTGGCCCGGAGTCTGGGTCCACCTGGACATTGCTGCACCGGTGCATGCTG
GTGAGCGAGCCACAGGCTTCGGTGTGGCCCTCCTGCTGGCGCTCTTCGGCCGTGCCTCTGAGGACCCTCT
GCTGAACCTGGTGTCCCCACTGGGCTGTGAGGTGGATGTCGAGGAGGGGGACCTGGGGAGGGACTCCAAG
AGACGCAGGCTTGTGTGA

Translation (495 aa):
MELHGGNRGGYQPKALEQSGCWLWQAALSTLNPNPTDSCPLYLNYATVAALPCRVSRHNSPSAAHFITRL
VRTCLPPGAHRCIVMVCEQPEVFASACALARAFPLFTHRSGASRRLEKKTVTVEFFLVGQDNGPVEVSTL
QCLANATDGVRLAARIVDTPCNEMNTDTFLEEINKVGKELGIIPTIIRDEELKTRGFGGIYGVGKAALHP
PALAVLSHTPDGATQTIAWVGKGIVYDTGGLSIKGKTTMPGMKRDCGGAAAVLGAFRAAIKQGFKDNLHA
VFCLAENSVGPNATRPDDIHLLYSGKTVEINNTDAEGRLVLADGVSYACKDLGADIILDMATLTGAQGIA
TGKYHAAVLTNSAEWEAACVKAGRKCGDLVHPLVYCPELHFSEFTSAVADMKNSVADRDNSPSSCAGLFI
ASHIGFDWPGVWVHLDIAAPVHAGERATGFGVALLLALFGRASEDPLLNLVSPLGCEVDVEEGDLGRDSK
RRRLV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH