NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS2947.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2947.1 Public Homo sapiens 3 ZPLD1 24 110 108 CCDS HistoryNCBI Gene:131368Re-query CCDS DB by CCDS ID:2947.1Re-query CCDS DB by GeneID:131368See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2947.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000306176.5 ENSP00000307801.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000306176.5Link to Ensembl Protein Viewer:ENSP00000307801.1Re-query CCDS DB by Nucleotide ID:ENST00000306176Re-query CCDS DB by Protein ID:ENSP00000307801
Original member Current member NCBI NM_175056.2 NP_778226.1 Accepted alive Link to Nucleotide Sequence:NM_175056.2Link to Protein Sequence:NP_778226.1Re-query CCDS DB by Nucleotide ID:NM_175056Re-query CCDS DB by Protein ID:NP_778226Link to BLAST:NP_778226.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_778226.1 431 Q8TCW7-2 431 100% 0 0

Chromosomal Locations for CCDS 2947.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 102435115 102435154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 102438480 102438593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 102452919 102453139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 102456193 102456374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 102457781 102457853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 102462281 102462378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 102464171 102464251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 102468964 102469135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 102470394 102470502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 102477012 102477041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 102477443 102477618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1296 nt):
ATGATGCTCAGGTTTTCCATGTGCAGGGGAAATGATGAAGGTTTTGCAATGGAACAAATATGGTTGCTGC
TGCTTCTAACAATTAGAGTGCTTCCGGGGTCTGCTCAGTTCAACGGCTACAACTGTGATGCCAACCTCCA
CAGTAGATTTCCTGCTGAAAGAGACATCAGTGTCTATTGTGGAGTGCAGGCTATTACGATGAAGATTAAT
TTTTGCACGGTACTTTTCTCGGGTTATTCGGAAACAGATCTGGCACTGAATGGAAGGCATGGGGACTCCC
ACTGCAGAGGGTTCATCAATAACAACACCTTTCCAGCAGTGGTCATTTTTATCATCAATCTCAGCACCTT
GGAGGGCTGTGGAAACAACCTGGTGGTATCCACAATTCCTGGAGTCAGTGCTTATGGAAATGCAACTTCA
GTGCAAGTAGGAAATATTTCAGGATATATTGATACTCCAGACCCACCAACAATCATCAGCTATCTACCTG
GGCTTCTTTACAAATTTAGTTGTAGTTATCCATTGGAATACCTGGTTAATAATACCCAGCTTGCTTCGTC
CTCAGCGGCTATTTCTGTGAGAGAGAACAATGGCACATTTGTCAGCACTTTGAACCTGCTCCTTTATAAC
GATTCAACCTACAACCAGCAGTTAATTATCCCCAGTATAGGATTACCTTTGAAAACCAAAGTATTTGCAG
CTGTCCAAGCCACTAATTTGGATGGCAGATGGAATGTTTTAATGGATTATTGCTATACTACCCCATCAGG
AAACCCAAATGATGACATTCGATATGATCTTTTCCTTAGCTGTGACAAGGACCCTCAGACCACCGTCATT
GAGAATGGCCGAAGCCAGCGGGGCCGGTTTTCTTTTGAAGTGTTCCGATTTGTGAAACACAAGAATCAGA
AAATGTCCACTGTCTTCTTGCACTGCGTTACCAAGCTCTGCAGAGCAGATGACTGCCCCTTCCTTATGCC
GATTTGCAGCCACAGAGAAAGGAGAGATGCTGGGAGGAGGACGACTTGGAGCCCCCAGAGCTCTTCTGGC
AGCGCGGTGCTCTCTGCTGGTCCCATCATTACTCGGAGTGATGAGACTCCAACCAACAATTCGCAACTTG
GTTCTCCAAGTATGCCTCCCTTCCAGCTGAACGCCATCACCAGCGCACTGATATCAGGAATGGTCATTCT
GGGAGTTACGAGCTTTTCTCTTCTTCTGTGCTCACTGGCCCTTCTGCACAGGAAGGGACCCACAAGTTTA
GTGTTGAATGGCATAAGAAACCCAGTCTTTGACTGA

Translation (431 aa):
MMLRFSMCRGNDEGFAMEQIWLLLLLTIRVLPGSAQFNGYNCDANLHSRFPAERDISVYCGVQAITMKIN
FCTVLFSGYSETDLALNGRHGDSHCRGFINNNTFPAVVIFIINLSTLEGCGNNLVVSTIPGVSAYGNATS
VQVGNISGYIDTPDPPTIISYLPGLLYKFSCSYPLEYLVNNTQLASSSAAISVRENNGTFVSTLNLLLYN
DSTYNQQLIIPSIGLPLKTKVFAAVQATNLDGRWNVLMDYCYTTPSGNPNDDIRYDLFLSCDKDPQTTVI
ENGRSQRGRFSFEVFRFVKHKNQKMSTVFLHCVTKLCRADDCPFLMPICSHRERRDAGRRTTWSPQSSSG
SAVLSAGPIITRSDETPTNNSQLGSPSMPPFQLNAITSALISGMVILGVTSFSLLLCSLALLHRKGPTSL
VLNGIRNPVFD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH