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Report for CCDS33861.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33861.1 Public Homo sapiens 3 MSL2 24 110 108 CCDS HistoryNCBI Gene:55167Re-query CCDS DB by CCDS ID:33861.1Re-query CCDS DB by GeneID:55167See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33861.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000309993.3 ENSP00000311827.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000309993.3Link to Ensembl Protein Viewer:ENSP00000311827.2Re-query CCDS DB by Nucleotide ID:ENST00000309993Re-query CCDS DB by Protein ID:ENSP00000311827
Original member Current member NCBI NM_018133.4 NP_060603.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018133.4Link to Protein Sequence:NP_060603.2Re-query CCDS DB by Nucleotide ID:NM_018133Re-query CCDS DB by Protein ID:NP_060603Link to BLAST:NP_060603.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060603.2 577 Q9HCI7-1 577 100% 0 0

Chromosomal Locations for CCDS 33861.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 136151147 136152738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 136194972 136195113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1734 nt):
ATGAACCCCGTGAATGCTACTGCTCTCTACATTTCCGCGAGCCGCCTAGTGCTCAACTACGACCCCGGAG
ACCCCAAGGCGTTTACTGAGATTAACAGGCTCTTGCCTTACTTCCGACAGTCCCTTTCGTGCTGTGTTTG
CGGACATTTGCTACAAGATCCTATTGCACCCACCAACTCCACCTGCCAACATTATGTCTGCAAAACTTGT
AAAGGCAAGAAAATGATGATGAAACCTTCCTGTAGCTGGTGCAAAGACTATGAGCAGTTTGAGGAAAACA
AGCAGTTAAGCATCCTAGTGAACTGCTACAAAAAACTATGCGAGTATATAACACAGACTACACTGGCACG
GGATATAATAGAAGCAGTTGACTGTTCTTCTGATATTTTGGCTTTGCTTAATGATGGATCATTGTTTTGT
GAGGAGACAGAAAAACCCTCAGATTCATCCTTTACTTTGTGTTTGACACATTCCCCTTTACCTTCAACCT
CAGAACCCACAACTGATCCTCAAGCTAGTTTATCTCCAATGTCTGAAAGCACCCTCAGCATTGCTATTGG
CAGTTCTGTTATCAATGGTTTGCCTACTTATAATGGGCTTTCAATAGATAGATTTGGTATAAATATTCCT
TCACCTGAACATTCAAATACGATTGACGTATGTAATACTGTTGACATAAAAACTGAGGATCTGTCTGACA
GCCTGCCACCCGTTTGTGACACAGTAGCCACTGACTTATGTTCCACAGGCATTGATATCTGCAGTTTCAG
TGAAGATATAAAACCTGGAGACTCTCTGTTACTGAGTGTTGAGGAAGTACTCCGCAGCTTAGAAACTGTT
TCAAATACAGAGGTCTGTTGCCCTAATTTGCAGCCGAACTTGGAAGCCACTGTATCCAATGGACCTTTTC
TGCAGCTTTCTTCCCAGTCTCTTAGCCATAATGTTTTTATGTCCACCAGTCCTGCACTTCATGGGTTATC
ATGTACAGCAGCAACTCCGAAGATAGCAAAATTGAATAGAAAACGATCCAGATCAGAGAGTGACAGTGAG
AAAGTTCAGCCACTTCCAATTTCTACCATTATCCGAGGCCCAACACTGGGGGCATCTGCTCCTGTGACAG
TGAAACGGGAGAGCAAAATTTCTCTTCAACCTATAGCAACTGTTCCCAATGGAGGCACAACACCTAAAAT
CAGCAAAACTGTACTTTTATCTACTAAAAGCATGAAAAAGAGTCATGAACATGGATCCAAGAAATCTCAC
TCTAAAACCAAGCCAGGTATTCTTAAAAAAGACAAAGCAGTAAAGGAAAAGATTCCTAGTCATCATTTTA
TGCCAGGAAGTCCTACCAAGACTGTGTACAAAAAACCCCAGGAAAAGAAAGGGTGTAAATGTGGGCGTGC
TACTCAAAATCCAAGTGTTCTTACATGCCGAGGCCAACGCTGCCCTTGCTACTCTAACCGCAAAGCCTGC
TTAGATTGTATATGTCGTGGCTGCCAAAACTCCTATATGGCCAATGGGGAGAAGAAGCTGGAGGCATTTG
CCGTGCCAGAAAAGGCCTTGGAGCAGACCAGGCTCACTTTGGGCATTAACGTGACTAGCATTGCTGTGCG
TAACGCTAGTACCAGCACCAGTGTAATAAATGTCACAGGGTCCCCAGTAACGACGTTTTTAGCTGCCAGT
ACACATGATGATAAAAGTTTGGATGAAGCTATAGACATGAGATTCGACTGTTAA

Translation (577 aa):
MNPVNATALYISASRLVLNYDPGDPKAFTEINRLLPYFRQSLSCCVCGHLLQDPIAPTNSTCQHYVCKTC
KGKKMMMKPSCSWCKDYEQFEENKQLSILVNCYKKLCEYITQTTLARDIIEAVDCSSDILALLNDGSLFC
EETEKPSDSSFTLCLTHSPLPSTSEPTTDPQASLSPMSESTLSIAIGSSVINGLPTYNGLSIDRFGINIP
SPEHSNTIDVCNTVDIKTEDLSDSLPPVCDTVATDLCSTGIDICSFSEDIKPGDSLLLSVEEVLRSLETV
SNTEVCCPNLQPNLEATVSNGPFLQLSSQSLSHNVFMSTSPALHGLSCTAATPKIAKLNRKRSRSESDSE
KVQPLPISTIIRGPTLGASAPVTVKRESKISLQPIATVPNGGTTPKISKTVLLSTKSMKKSHEHGSKKSH
SKTKPGILKKDKAVKEKIPSHHFMPGSPTKTVYKKPQEKKGCKCGRATQNPSVLTCRGQRCPCYSNRKAC
LDCICRGCQNSYMANGEKKLEAFAVPEKALEQTRLTLGINVTSIAVRNASTSTSVINVTGSPVTTFLAAS
THDDKSLDEAIDMRFDC


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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