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Report for CCDS93571.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
93571.1 Public Homo sapiens 4 LARP7 24 110 108 CCDS HistoryNCBI Gene:51574Re-query CCDS DB by CCDS ID:93571.1Re-query CCDS DB by GeneID:51574See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 93571.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000693375.1 ENSP00000508585.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000693375.1Link to Ensembl Protein Viewer:ENSP00000508585.1Re-query CCDS DB by Nucleotide ID:ENST00000693375Re-query CCDS DB by Protein ID:ENSP00000508585
Original member Current member EBI ENST00000692416.1 ENSP00000509527.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000692416.1Link to Ensembl Protein Viewer:ENSP00000509527.1Re-query CCDS DB by Nucleotide ID:ENST00000692416Re-query CCDS DB by Protein ID:ENSP00000509527
Original member Current member NCBI NM_001370981.1 NP_001357910.1 Accepted alive Link to Nucleotide Sequence:NM_001370981.1Link to Protein Sequence:NP_001357910.1Re-query CCDS DB by Nucleotide ID:NM_001370981Re-query CCDS DB by Protein ID:NP_001357910Link to BLAST:NP_001357910.1
Original member Current member NCBI NM_001370982.1 NP_001357911.1 Accepted alive Link to Nucleotide Sequence:NM_001370982.1Link to Protein Sequence:NP_001357911.1Re-query CCDS DB by Nucleotide ID:NM_001370982Re-query CCDS DB by Protein ID:NP_001357911Link to BLAST:NP_001357911.1

Chromosomal Locations for CCDS 93571.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 112646386 112646451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112646588 112646671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112646791 112646955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112647034 112647127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112647199 112647549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112647690 112647834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112649535 112649686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112650461 112650582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112653077 112653236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112654068 112654159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112657247 112657327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1512 nt):
ATGAAAAAATTGACTACTGATGGGAAGTTAATTGCCAGAGCATTGAGAAGTTCAGCTGTTGTAGAGCTTG
ATTTGGAAGGCACCAGAATCCGGAGGAAAAAACCTCTGGGGGAAAGACCAAAGGATGAGGATGAACGCAC
AGTGTATGTGGAGTTACTTCCCAAAAATGTTAATCACAGCTGGATTGAAAGAGTATTTGGGAAATGTGGC
AATGTTGTTTATATAAGTATACCACATTATAAGTCTACTGGAGATCCAAAGGGATTTGCGTTTGTGGAAT
TTGAAACAAAAGAACAAGCAGCAAAAGCAATTGAGTTTCTTAACAACCCACCAGAAGAAGCACCAAGAAA
ACCTGGCATATTTCCTAAAACAGTGAAAAATAAGCCCATTCCAGCCTTAAGAGTTGTGGAAGAGAAGAAA
AAGAAAAAGAAGAAGAAAGGCCGAATGAAAAAGGAAGACAATATCCAAGCCAAAGAAGAAAACATGGACA
CAAGCAACACCAGCATCAGTAAAATGAAAAGATCCAGACCCACATCTGAGGGCTCTGACATTGAGTCCAC
TGAACCCCAAAAGCAGTGCTCAAAGAAAAAGAAAAAACGGGACAGAGTTGAAGCATCTAGCTTACCTGAA
GTCAGAACAGGGAAGAGGAAGAGAAGCAGCTCTGAAGATGCAGAATCCCTAGCTCCCCGATCAAAAGTAA
AGAAAATTATTCAGAAAGACATCATTAAGGAAGCATCAGAAGCTTCCAAGGAAAATAGAGATATAGAAAT
CTCTACTGAAGAGGAAAAGGATACTGGAGATCTAAAAGATAGCTCTCTCTTGAAAACAAAAAGGAAACAT
AAGAAAAAACATAAAGAGAGACATAAAATGGGAGAAGAAGTTATACCATTAAGAGTGCTATCAAAGAGCG
AATGGATGGATTTGAAAAAAGAGTATTTAGCGCTACAAAAAGCTAGCATGGCTTCTTTAAAAAAAACAAT
ATCCCAAATAAAATCAGAGTCAGAAATGGAAACAGACAGTGGAGTACCTCAAAACACTGGAATGAAAAAT
GAAAAAACAGCCAACAGGGAAGAGTGTCGCACCCAGGAGAAAGTTAATGCAACAGGACCACAGTTCGTGA
GTGGAGTGATTGTGAAGATCATTAGCACAGAGCCTCTACCTGGCAGGAAACAAGTCCGGGATACTTTGGC
AGCAATCTCAGAAGTTCTTTATGTTGATTTGCTAGAAGGGGATACAGAATGCCATGCTAGATTTAAAACT
CCTGAGGATGCTCAAGCAGTAATAAATGCCTATACAGAAATTAACAAGAAACACTGCTGGAAACTCGAGA
TCCTTTCTGGTGATCACGAACAAAGGTATTGGCAGAAGATTTTGGTTGATAGACAGGCAAAACTTAATCA
GCCTCGGGAAAAGAAAAGAGGCACTGAAAAGTTAATCACCAAAGCTGAAAAGATTAGACTGGCAAAGACT
CAACAAGCGAGTAAACATATAAGATTTTCTGAATATGATTGA

Translation (503 aa):
MKKLTTDGKLIARALRSSAVVELDLEGTRIRRKKPLGERPKDEDERTVYVELLPKNVNHSWIERVFGKCG
NVVYISIPHYKSTGDPKGFAFVEFETKEQAAKAIEFLNNPPEEAPRKPGIFPKTVKNKPIPALRVVEEKK
KKKKKKGRMKKEDNIQAKEENMDTSNTSISKMKRSRPTSEGSDIESTEPQKQCSKKKKKRDRVEASSLPE
VRTGKRKRSSSEDAESLAPRSKVKKIIQKDIIKEASEASKENRDIEISTEEEKDTGDLKDSSLLKTKRKH
KKKHKERHKMGEEVIPLRVLSKSEWMDLKKEYLALQKASMASLKKTISQIKSESEMETDSGVPQNTGMKN
EKTANREECRTQEKVNATGPQFVSGVIVKIISTEPLPGRKQVRDTLAAISEVLYVDLLEGDTECHARFKT
PEDAQAVINAYTEINKKHCWKLEILSGDHEQRYWQKILVDRQAKLNQPREKKRGTEKLITKAEKIRLAKT
QQASKHIRFSEYD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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