NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS93657.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
93657.1 Public Homo sapiens 4 TRIM2 24 110 108 CCDS HistoryNCBI Gene:23321Re-query CCDS DB by CCDS ID:93657.1Re-query CCDS DB by GeneID:23321See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 93657.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000675710.1 ENSP00000501997.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000675710.1Link to Ensembl Protein Viewer:ENSP00000501997.1Re-query CCDS DB by Nucleotide ID:ENST00000675710Re-query CCDS DB by Protein ID:ENSP00000501997
Original member Current member EBI ENST00000676335.1 ENSP00000502243.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000676335.1Link to Ensembl Protein Viewer:ENSP00000502243.1Re-query CCDS DB by Nucleotide ID:ENST00000676335Re-query CCDS DB by Protein ID:ENSP00000502243
Original member Current member EBI ENST00000675782.1 ENSP00000502776.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000675782.1Link to Ensembl Protein Viewer:ENSP00000502776.1Re-query CCDS DB by Nucleotide ID:ENST00000675782Re-query CCDS DB by Protein ID:ENSP00000502776
Original member Current member NCBI NM_001375522.1 NP_001362451.1 Accepted alive Link to Nucleotide Sequence:NM_001375522.1Link to Protein Sequence:NP_001362451.1Re-query CCDS DB by Nucleotide ID:NM_001375522Re-query CCDS DB by Protein ID:NP_001362451Link to BLAST:NP_001362451.1
Original member Current member NCBI NM_001375523.1 NP_001362452.1 Accepted alive Link to Nucleotide Sequence:NM_001375523.1Link to Protein Sequence:NP_001362452.1Re-query CCDS DB by Nucleotide ID:NM_001375523Re-query CCDS DB by Protein ID:NP_001362452Link to BLAST:NP_001362452.1
Original member Current member NCBI NM_001375525.1 NP_001362454.1 Accepted alive Link to Nucleotide Sequence:NM_001375525.1Link to Protein Sequence:NP_001362454.1Re-query CCDS DB by Nucleotide ID:NM_001375525Re-query CCDS DB by Protein ID:NP_001362454Link to BLAST:NP_001362454.1

Chromosomal Locations for CCDS 93657.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 153276017 153276130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 153292982 153293133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 153294305 153294485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 153295313 153296036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 153315485 153315588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 153315832 153315999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 153322648 153322816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 153324078 153324148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 153328530 153328670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 153334814 153334966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1977 nt):
ATGGACGTGCTGCAGCGAACTCCAGGCAGCAACGCTGAGGAGTCTTCCATCCTGGAGACAGTCACTGCTG
TGGCTGCGGGAAAGCCTCTCTCTTGCCCAAACCACGATGGGAATGTGATGGAATTTTACTGCCAGTCCTG
TGAGACTGCCATGTGTCGGGAGTGCACGGAGGGGGAGCACGCAGAGCACCCCACAGTTCCACTCAAGGAT
GTGGTGGAACAGCACAAGGCCTCGCTCCAGGTCCAGCTGGATGCTGTCAACAAAAGGCTCCCAGAAATAG
ATTCTGCTCTTCAGTTCATCTCTGAAATCATTCATCAGTTAACCAACCAAAAGGCCAGCATCGTGGATGA
CATTCATTCCACCTTTGATGAGCTCCAGAAGACTTTAAATGTGCGCAAGAGTGTGCTGCTTATGGAATTG
GAGGTCAACTATGGCCTCAAACACAAAGTCCTCCAGTCGCAGCTGGATACTCTGCTCCAGGGGCAGGAGA
GCATTAAGAGCTGCAGCAACTTCACAGCGCAGGCCCTCAACCATGGCACGGAGACCGAGGTCCTACTGGT
GAAGAAGCAGATGAGCGAGAAGCTGAACGAGCTGGCCGACCAGGACTTCCCCTTGCACCCGCGGGAGAAC
GACCAGCTGGATTTCATCGTGGAAACCGAGGGGCTGAAGAAGTCCATCCACAACCTCGGGACGATCTTAA
CCACCAACGCCGTTGCCTCAGAGACAGTGGCCACGGGCGAGGGGCTGCGGCAGACCATCATCGGGCAGCC
CATGTCCGTCACCATCACCACCAAGGACAAAGACGGTGAGCTGTGCAAAACCGGCAACGCCTACCTCACC
GCCGAACTGAGCACCCCCGACGGGAGCGTGGCAGACGGGGAGATCCTGGACAACAAGAACGGCACCTATG
AGTTTTTGTACACTGTCCAGAAGGAAGGGGACTTTACCCTGTCTCTGAGACTCTATGACCAGCACATCCG
AGGCAGCCCGTTTAAGCTGAAAGTGATCCGATCCGCTGATGTGTCTCCCACCACAGAAGGCGTGAAGAGG
CGCGTTAAGTCCCCGGGGAGCGGCCACGTCAAGCAGAAAGCTGTGAAAAGACCCGCAAGCATGTACAGCA
CTGGAAAACGAAAAGAGAATCCCATCGAAGACGATTTGATCTTTCGAGTGGGTACCAAAGGAAGAAATAA
AGGAGAGTTTACAAATCTTCAGGGGGTAGCTGCATCTACAAATGGAAAGATATTAATTGCAGACAGTAAC
AACCAATGTGTGCAGATATTTTCCAATGATGGCCAGTTCAAAAGTCGTTTTGGCATACGGGGACGCTCTC
CGGGGCAGCTGCAGCGGCCCACAGGAGTGGCTGTACATCCCAGTGGGGACATAATCATTGCCGATTATGA
TAATAAATGGGTCAGCATTTTCTCCTCCGATGGGAAATTTAAGACAAAAATTGGATCAGGAAAGCTGATG
GGACCCAAAGGAGTTTCTGTGGACCGCAATGGGCACATTATTGTTGTGGACAACAAGGCGTGCTGCGTGT
TTATCTTCCAGCCAAACGGGAAAATAGTCACCAGGTTTGGTAGCCGAGGAAATGGGGACAGGCAGTTTGC
AGGTCCCCATTTTGCAGCTGTAAATAGCAATAATGAGATTATTATTACAGATTTCCATAATCATTCTGTC
AAGGTGTTTAATCAGGAAGGAGAATTCATGTTGAAGTTTGGCTCAAATGGAGAAGGAAATGGGCAGTTTA
ATGCTCCAACAGGTGTAGCAGTGGATTCAAATGGAAACATCATTGTGGCCGACTGGGGAAACAGCAGGAT
CCAGGTTTTTGATGGGAGTGGATCATTTTTGTCCTACATTAACACATCTGCTGACCCACTCTATGGCCCC
CAAGGCCTGGCCCTAACTTCAGATGGTCATGTTGTGGTTGCAGACTCTGGAAATCACTGTTTCAAAGTCT
ATCGATACTTACAGTAA

Translation (658 aa):
MDVLQRTPGSNAEESSILETVTAVAAGKPLSCPNHDGNVMEFYCQSCETAMCRECTEGEHAEHPTVPLKD
VVEQHKASLQVQLDAVNKRLPEIDSALQFISEIIHQLTNQKASIVDDIHSTFDELQKTLNVRKSVLLMEL
EVNYGLKHKVLQSQLDTLLQGQESIKSCSNFTAQALNHGTETEVLLVKKQMSEKLNELADQDFPLHPREN
DQLDFIVETEGLKKSIHNLGTILTTNAVASETVATGEGLRQTIIGQPMSVTITTKDKDGELCKTGNAYLT
AELSTPDGSVADGEILDNKNGTYEFLYTVQKEGDFTLSLRLYDQHIRGSPFKLKVIRSADVSPTTEGVKR
RVKSPGSGHVKQKAVKRPASMYSTGKRKENPIEDDLIFRVGTKGRNKGEFTNLQGVAASTNGKILIADSN
NQCVQIFSNDGQFKSRFGIRGRSPGQLQRPTGVAVHPSGDIIIADYDNKWVSIFSSDGKFKTKIGSGKLM
GPKGVSVDRNGHIIVVDNKACCVFIFQPNGKIVTRFGSRGNGDRQFAGPHFAAVNSNNEIIITDFHNHSV
KVFNQEGEFMLKFGSNGEGNGQFNAPTGVAVDSNGNIIVADWGNSRIQVFDGSGSFLSYINTSADPLYGP
QGLALTSDGHVVVADSGNHCFKVYRYLQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH