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Report for CCDS47294.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47294.1 Public Homo sapiens 5 PCDHGA11 24 110 108 CCDS HistoryNCBI Gene:56105Re-query CCDS DB by CCDS ID:47294.1Re-query CCDS DB by GeneID:56105See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47294.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000398587.7 ENSP00000381589.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000398587.7Link to Ensembl Protein Viewer:ENSP00000381589.2Re-query CCDS DB by Nucleotide ID:ENST00000398587Re-query CCDS DB by Protein ID:ENSP00000381589
Original member Current member NCBI NM_018914.3 NP_061737.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018914.3Link to Protein Sequence:NP_061737.1Re-query CCDS DB by Nucleotide ID:NM_018914Re-query CCDS DB by Protein ID:NP_061737Link to BLAST:NP_061737.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061737.1 935 Q9Y5H2-1 935 100% 0 0

Chromosomal Locations for CCDS 47294.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 141421228 141423660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141494807 141494865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141505393 141505481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141510947 141511173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2808 nt):
ATGGCGAATCGGCTACAGCGCGGGGACCGCAGTCGGCTGCTGCTGCTGCTGTGCATTTTCCTGGGGACGC
TGCGGGGGTTCCGGGCCAGGCAGATCCGATATTCGGTGCCAGAAGAGACCGAAAAGGGCTCCTTCGTGGG
CAATATCTCCAAGGACCTGGGGCTGGAGCCCCGGGAGCTGGCGAAGCGCGGAGTCCGCATCGTCTCCAGA
GGGAAGACACAGCTTTTCGCTGTGAATCCGCGAAGCGGCAGCTTGATCACGGCAGGCAGGATAGACCGGG
AGGAGCTCTGTGAGACGGTGTCCTCCTGTTTTTTAAATATGGAACTTCTCGTGGAAGACACCTTGAAGAT
TTACGGAGTGGAGGTGGAAATAATAGATATTAATGATAACGCCCCCAGCTTCCAGGAGGACGAAGTGGAG
ATAAAAGTCAGTGAGCACGCAATTCCTGGGGCGCGATTTGCTCTTCCTAATGCTAGGGATCCAGATGTGG
GCGTGAACTCCCTCCAGAGCTACCAGCTCAGCCCTAATAATTACTTTTCCTTGCAACTGCGGGGCAGAAC
GGATGGGGCCAAGAATCCAGAGCTAGTACTGGAGGGAAGCCTGGACCGAGAGAAAGAGGCTGCTCACCTG
CTCCTCCTCACAGCTTTAGATGGAGGCGATCCCATCCGAAAGGGCGCAGTTCCCATTCGTGTGGTGGTCC
TCGATGTAAATGATCACATCCCAATGTTTACACAGTCCGTATATCGCGTGAGTGTTCCAGAAAACATCAG
CTCCGGAACTCGGGTGCTGATGGTTAATGCAACGGATCCAGACGAGGGAATCAACGGGGAAGTAATGTAT
TCATTTCGGAACATGGAAAGCAAGGCTTCTGAAATATTCCAATTGGATTCACAAACTGGAGAAGTTCAAG
TACGGGGGTCTCTGGATTTTGAAAAATATAGATTCTATGAGATGGAAATTCAAGGCCAAGATGGTGGAGG
TCTCTTTACCACCACGACGATGTTGATCACTGTTGTGGATGTGAATGATAACGCTCCAGAAATAACTATC
ACCTCTTCTATTAATTCAATTCTGGAAAACTCTCCTCCAGGTACAGTGATTGCTCTTCTAAATGTGCAAG
ATCAAGATTCTGGAGAAAATGGTCAAGTCTCCTGTTTTATTCCTAACCACCTGCCTTTTAAATTAGAAAA
GACTTATGGAAATTATTACAAATTGATAACAAGCAGAGTGCTGGACAGGGAGTTGGTCCAGAGCTACAAT
ATAACGTTGACAGCCACAGACCAGGGAAGCCCGCCTTTGTCTGCAGAAACTCATGTCTGGCTGAATGTGG
CAGATGACAACGATAACCCTCCCGTTTTTCCTCACTCCTCTTACTCTGCCTACATTCCCGAAAACAACCC
CAGGGGTGCCTCCATCTTCTCAGTGACCGCCCTCGACCCGGACAGCAAACAGAATGCCCTGGTCACTTAC
TCTCTGACGGATGACACTGTCCAGGGGGTGCCTCTGTCCTCCTATGTCTCTATTAACTCCAACACTGGTG
TTCTCTATGCCCTACAATCCTTCGACTATGAGCAGTTTCGAGACTTAGAACTGAGAGTGATAGCACGTGA
CAGCGGGGACCCGCCCCTCAGCAGCAACGTGTCGCTGAGCCTGTTCGTGCTGGACCAGAACGACAATGCG
CCCGAGATCCTGTACCCTGCCCTCCCCACAGACGGCTCCACTGGCGTGGAGCTGGCGCCCCGCTCTGCGG
AACCTGGCTACCTGGTGACCAAGGTGGTTGCGGTGGACAAAGATTCAGGCCAGAACGCCTGGCTGTCCTA
TCGCCTGCTTAAGGCCAGCGAGCCGGGACTCTTCGCGGTGGGGGAGCACACGGGCGAGGTGCGTACAGCG
CGGGCACTGCTGGACAGAGACGCGCTCAAGCAGAGCCTCGTGGTGGCCGTCCAGGACCACGGCCAGCCCC
CTCTCTCGGCCACCGTCACGCTCACCGTGGCTGTGGCCGACAGCATCCCCGAAGTCCTGGCGGACCTCGG
CAGCCTCGAGTCTCTGGCTAACTCTGAAACCTCAGACCTCTCGCTGTACTTGGTGGTGGCGGTGGCCGCA
GTCTCCTGCATCTTCCTGGTCTTTGTCATCGTGCTGCTGGCACTCAGGCTGTGGCGCTGGCATAAGTCAC
GCCTGCTGCAGGCTTCTGAAGGCGGGTTGGCAGGTATGCCCACGTCACATTTTGTAGGCGTGGACGGGGT
ACAGGCTTTCCTGCAAACCTATTCCCACGAGGTCTCTCTCATTGCGGACTCGCAGAAGAGTCACCTGATT
TTCCCCCAGCCCAACTATGGGGACACGCTCATCAGCCAGGAGAGCTGTGAGAAAAGCGAGCCACTCTTGA
TAGCTGAAGACTCAGCTATCATTTTAGGCAAATGTGACCCGACAAGTAATCAGCAAGCCCCGCCCAACAC
GGACTGGCGTTTCTCTCAGGCCCAGAGACCCGGCACCAGCGGCTCCCAAAATGGCGATGACACCGGCACC
TGGCCCAACAACCAGTTTGACACAGAGATGCTGCAAGCCATGATCTTGGCGTCCGCCAGTGAAGCTGCTG
ATGGGAGCTCCACCCTGGGAGGGGGTGCCGGCACCATGGGATTGAGCGCCCGCTACGGACCCCAGTTCAC
CCTGCAGCACGTGCCCGACTACCGCCAGAATGTCTACATCCCAGGCAGCAATGCCACACTGACCAACGCA
GCTGGCAAGCGGGATGGCAAGGCCCCAGCAGGTGGCAATGGCAACAAGAAGAAGTCGGGCAAGAAGGAGA
AGAAGTAA

Translation (935 aa):
MANRLQRGDRSRLLLLLCIFLGTLRGFRARQIRYSVPEETEKGSFVGNISKDLGLEPRELAKRGVRIVSR
GKTQLFAVNPRSGSLITAGRIDREELCETVSSCFLNMELLVEDTLKIYGVEVEIIDINDNAPSFQEDEVE
IKVSEHAIPGARFALPNARDPDVGVNSLQSYQLSPNNYFSLQLRGRTDGAKNPELVLEGSLDREKEAAHL
LLLTALDGGDPIRKGAVPIRVVVLDVNDHIPMFTQSVYRVSVPENISSGTRVLMVNATDPDEGINGEVMY
SFRNMESKASEIFQLDSQTGEVQVRGSLDFEKYRFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITI
TSSINSILENSPPGTVIALLNVQDQDSGENGQVSCFIPNHLPFKLEKTYGNYYKLITSRVLDRELVQSYN
ITLTATDQGSPPLSAETHVWLNVADDNDNPPVFPHSSYSAYIPENNPRGASIFSVTALDPDSKQNALVTY
SLTDDTVQGVPLSSYVSINSNTGVLYALQSFDYEQFRDLELRVIARDSGDPPLSSNVSLSLFVLDQNDNA
PEILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYRLLKASEPGLFAVGEHTGEVRTA
RALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADSIPEVLADLGSLESLANSETSDLSLYLVVAVAA
VSCIFLVFVIVLLALRLWRWHKSRLLQASEGGLAGMPTSHFVGVDGVQAFLQTYSHEVSLIADSQKSHLI
FPQPNYGDTLISQESCEKSEPLLIAEDSAIILGKCDPTSNQQAPPNTDWRFSQAQRPGTSGSQNGDDTGT
WPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNA
AGKRDGKAPAGGNGNKKKSGKKEKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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