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Report for CCDS5128.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5128.1 Public Homo sapiens 6 SMPDL3A 24 110 108 CCDS HistoryNCBI Gene:10924Re-query CCDS DB by CCDS ID:5128.1Re-query CCDS DB by GeneID:10924See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5128.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000368440.5 ENSP00000357425.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000368440.5Link to Ensembl Protein Viewer:ENSP00000357425.4Re-query CCDS DB by Nucleotide ID:ENST00000368440Re-query CCDS DB by Protein ID:ENSP00000357425
Original member Current member NCBI NM_006714.5 NP_006705.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006714.5Link to Protein Sequence:NP_006705.1Re-query CCDS DB by Nucleotide ID:NM_006714Re-query CCDS DB by Protein ID:NP_006705Link to BLAST:NP_006705.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006705.1 453 Q92484-1 453 100% 0 0

Chromosomal Locations for CCDS 5128.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 122789347 122789458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122795677 122795890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122796824 122796968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122801310 122801406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122803664 122803833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122804909 122805089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122806233 122806357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122809091 122809408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1362 nt):
ATGGCGCTGGTGCGCGCACTCGTCTGCTGCCTGCTGACTGCCTGGCACTGCCGCTCCGGCCTCGGGCTGC
CCGTGGCGCCCGCAGGCGGCAGGAATCCTCCTCCGGCGATAGGACAGTTTTGGCATGTGACTGACTTACA
CTTAGACCCTACTTACCACATCACAGATGACCACACAAAAGTGTGTGCTTCATCTAAAGGTGCAAATGCC
TCCAACCCTGGCCCTTTTGGAGATGTTCTGTGTGATTCTCCATATCAACTTATTTTGTCAGCATTTGATT
TTATTAAAAATTCTGGACAAGAAGCATCTTTCATGATATGGACAGGGGATAGCCCACCTCATGTTCCTGT
ACCTGAACTCTCAACAGACACTGTTATAAATGTGATCACTAATATGACAACCACCATCCAGAGTCTCTTT
CCAAATCTCCAGGTTTTCCCTGCGCTGGGTAATCATGACTATTGGCCACAGGATCAACTGCCTGTAGTCA
CCAGTAAAGTGTACAATGCAGTAGCAAACCTCTGGAAACCATGGCTAGATGAAGAAGCTATTAGTACTTT
AAGGAAAGGTGGTTTTTATTCACAGAAAGTTACAACTAATCCAAACCTTAGGATCATCAGTCTAAACACA
AACTTGTACTACGGCCCAAATATAATGACACTGAACAAGACTGACCCAGCCAACCAGTTTGAATGGCTAG
AAAGTACATTGAACAACTCTCAGCAGAATAAGGAGAAGGTGTATATCATAGCACATGTTCCAGTGGGGTA
TCTGCCATCTTCACAGAACATCACAGCAATGAGAGAATACTATAATGAGAAATTGATAGATATTTTTCAA
AAATACAGTGATGTCATTGCAGGACAATTTTATGGACACACTCACAGAGACAGCATTATGGTTCTTTCAG
ATAAAAAAGGAAGTCCAGTAAATTCTTTGTTTGTGGCTCCTGCTGTTACACCAGTGAAGAGTGTTTTAGA
AAAACAGACCAACAATCCTGGTATCAGACTGTTTCAGTATGATCCTCGTGATTATAAATTATTGGATATG
TTGCAGTATTACTTGAATCTGACAGAGGCGAATCTAAAGGGAGAGTCCATCTGGAAGCTGGAGTATATCC
TGACCCAGACCTACGACATTGAAGATTTGCAGCCGGAAAGTTTATATGGATTAGCTAAACAATTTACAAT
CCTAGACAGTAAGCAGTTTATAAAATACTACAATTACTTCTTTGTGAGTTATGACAGCAGTGTAACATGT
GATAAGACATGTAAGGCCTTTCAGATTTGTGCAATTATGAATCTTGATAATATTTCCTATGCAGATTGCC
TCAAACAGCTTTATATAAAGCACAATTACTAG

Translation (453 aa):
MALVRALVCCLLTAWHCRSGLGLPVAPAGGRNPPPAIGQFWHVTDLHLDPTYHITDDHTKVCASSKGANA
SNPGPFGDVLCDSPYQLILSAFDFIKNSGQEASFMIWTGDSPPHVPVPELSTDTVINVITNMTTTIQSLF
PNLQVFPALGNHDYWPQDQLPVVTSKVYNAVANLWKPWLDEEAISTLRKGGFYSQKVTTNPNLRIISLNT
NLYYGPNIMTLNKTDPANQFEWLESTLNNSQQNKEKVYIIAHVPVGYLPSSQNITAMREYYNEKLIDIFQ
KYSDVIAGQFYGHTHRDSIMVLSDKKGSPVNSLFVAPAVTPVKSVLEKQTNNPGIRLFQYDPRDYKLLDM
LQYYLNLTEANLKGESIWKLEYILTQTYDIEDLQPESLYGLAKQFTILDSKQFIKYYNYFFVSYDSSVTC
DKTCKAFQICAIMNLDNISYADCLKQLYIKHNY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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