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Report for CCDS5839.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5839.2 Under review, update Homo sapiens 7 STRA8 24 110 108 CCDS HistoryNCBI Gene:346673Re-query CCDS DB by CCDS ID:5839.2Re-query CCDS DB by GeneID:346673See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 5839.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000667288.1 ENSP00000499721.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000667288.1Link to Ensembl Protein Viewer:ENSP00000499721.1Re-query CCDS DB by Nucleotide ID:ENST00000667288Re-query CCDS DB by Protein ID:ENSP00000499721
Original member Current member NCBI NM_182489.3 NP_872295.2 Pending alive Link to Nucleotide Sequence:NM_182489.3Link to Protein Sequence:NP_872295.2Re-query CCDS DB by Nucleotide ID:NM_182489Re-query CCDS DB by Protein ID:NP_872295Link to BLAST:NP_872295.2

Chromosomal Locations for CCDS 5839.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 135240525 135240716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135242781 135242856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135243326 135243410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135245303 135245329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135246417 135246702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135251796 135251869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135255114 135255225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135258418 135258492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (927 nt):
ATGGCAACCCCTGAAGAAAACAGCAATCCCCATGACAGAGCAACACCCCAGCTGCCAGCACAGCTGCAGG
AGCTTGAGCATCGGGTGGCCCGGAGACGGCTGTCCCAGGCCCGCCACCGAGCCACCCTGGCAGCGCTCTT
CAACAACCTCAGGAAGACAGTGTACTCTCAGTCTGATCTCATAGCCTCAAAGTGGCAGGTTCTGAATAAG
GCAAAGAGTCATATTCCAGAACTGGAGCAAACCCTGGATAATTTGCTGAAGCTGAAAGCATCCTTCAACC
TGGAAGATGGGCATGCAAGCAGCTTAGAGGAGGTCAAGAAAGAATATGCCAGCATGTATTCTGGAAATGA
CAGTTTTCCTCAGAATGGTTCCTCCCCTTGGTATCTCAACTTTTACAAACAGACGATGGACCTTCTGACT
GGCAGCGGGATCATTACCCCGCAGGAGGCGGCGCTGCCCATCGTCTCCGCGGCCATCTCCCACCTGTGGC
AGAACCTCTCGGAGGAGAGGAAGGCCAGCCTCCGGCAGGCCTGGGCGCAGAAGCACCGCGGCCCTGCGAC
CCTGGCGGAGGCCTGCCGAGAGCCGGCCTGTGCCGAGGGCAGCGTGAAGGACAGCGGCGTGGACAGCCAG
GGGGCCAGCTGCTCGCTGGTCTCCACGCCCGAGGAGATCCTTTTTGAGGATGCCTTTGATGTGGCAAGCT
TCCTGGACAAAAGTGAGGTTCCGAGTACATCTAGCTCCAGTTCAGTGCTTGCCAGCTGCAACCCAGAAAA
CCCAGAGGAGAAGTTTCAGCTCTATATGCAGATCATCAACTTTTTTAAAGGCCTTAGCTGTGCAAACACT
CAAGTAAAGCAGGAAGCATCCTTTCCCGTTGATGAAGAGATGATCATGTTGCAGTGCACAGAGACCTTTG
ACGATGAAGATTTGTAA

Translation (308 aa):
MATPEENSNPHDRATPQLPAQLQELEHRVARRRLSQARHRATLAALFNNLRKTVYSQSDLIASKWQVLNK
AKSHIPELEQTLDNLLKLKASFNLEDGHASSLEEVKKEYASMYSGNDSFPQNGSSPWYLNFYKQTMDLLT
GSGIITPQEAALPIVSAAISHLWQNLSEERKASLRQAWAQKHRGPATLAEACREPACAEGSVKDSGVDSQ
GASCSLVSTPEEILFEDAFDVASFLDKSEVPSTSSSSSVLASCNPENPEEKFQLYMQIINFFKGLSCANT
QVKQEASFPVDEEMIMLQCTETFDDEDL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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