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Report for CCDS6118.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6118.1 Public Homo sapiens 8 NKX6-3 24 110 108 CCDS HistoryNCBI Gene:157848Re-query CCDS DB by CCDS ID:6118.1Re-query CCDS DB by GeneID:157848See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6118.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000524115.2 ENSP00000429553.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000524115.2Link to Ensembl Protein Viewer:ENSP00000429553.2Re-query CCDS DB by Nucleotide ID:ENST00000524115Re-query CCDS DB by Protein ID:ENSP00000429553
Original member Current member NCBI NM_152568.3 NP_689781.1 Accepted alive Link to Nucleotide Sequence:NM_152568.3Link to Protein Sequence:NP_689781.1Re-query CCDS DB by Nucleotide ID:NM_152568Re-query CCDS DB by Protein ID:NP_689781Link to BLAST:NP_689781.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689781.1 135 A6NJ46-2 135 100% 0 0

Chromosomal Locations for CCDS 6118.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 41646449 41646694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 41647194 41647355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (408 nt):
ATGCAGCAGGGGCAGCTGGCACCTGGGTCTAGGCTTTGCTCAGGGCCCTGGGGCCTCCCCGAGCTCCAAC
CCGCTGCGCCCTCCTCATCAGCCGCTCAGCTGCCCTGGGGCGAGAGCTGGGGGGAAGAAGCAGACACTCC
TGCATGTCTTTCTGCTTCTGGGGTGTGGTTCCAGAACCGCAGGACCAAGTGGCGGAAGAAGAGCGCCCTG
GAGCCCTCGTCCTCCACGCCCCGGGCCCCGGGCGGCGCGGGTGCAGGCGCAGGCGGGGACCGCGCACCCT
CGGAGAACGAGGACGACGAGTACAACAAGCCGCTGGACCCCGACTCGGACGACGAGAAGATCCGCCTGCT
GCTGCGCAAGCACCGCGCCGCCTTCTCGGTGCTCAGCCTGGGAGCGCACAGCGTCTGA

Translation (135 aa):
MQQGQLAPGSRLCSGPWGLPELQPAAPSSSAAQLPWGESWGEEADTPACLSASGVWFQNRRTKWRKKSAL
EPSSSTPRAPGGAGAGAGGDRAPSENEDDEYNKPLDPDSDDEKIRLLLRKHRAAFSVLSLGAHSV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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