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Report for CCDS55511.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55511.1 Public Homo sapiens X FGF13 24 110 108 CCDS HistoryNCBI Gene:2258Re-query CCDS DB by CCDS ID:55511.1Re-query CCDS DB by GeneID:2258See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55511.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000441825.8 ENSP00000409276.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000441825.8Link to Ensembl Protein Viewer:ENSP00000409276.2Re-query CCDS DB by Nucleotide ID:ENST00000441825Re-query CCDS DB by Protein ID:ENSP00000409276
Original member Current member NCBI NM_001139501.2 NP_001132973.1 Accepted alive Link to Nucleotide Sequence:NM_001139501.2Link to Protein Sequence:NP_001132973.1Re-query CCDS DB by Nucleotide ID:NM_001139501Re-query CCDS DB by Protein ID:NP_001132973Link to BLAST:NP_001132973.1
Original member Current member NCBI NM_001139502.2 NP_001132974.1 Accepted alive Link to Nucleotide Sequence:NM_001139502.2Link to Protein Sequence:NP_001132974.1Re-query CCDS DB by Nucleotide ID:NM_001139502Re-query CCDS DB by Protein ID:NP_001132974Link to BLAST:NP_001132974.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001132973.1 226 Q92913-5 226 100% 0 0
NP_001132974.1 226 Q92913-5 226 100% 0 0

Chromosomal Locations for CCDS 55511.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 138632850 138632986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 138635457 138635655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 138702984 138703087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 138708818 138708928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 138857512 138857641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (681 nt):
ATGTTACGACAAGATTCCATCCAATCTGCGGAATTAAAGAAAAAAGAGTCCCCCTTTCGTGCTAAGTGTC
ACGAAATCTTCTGCTGCCCGCTGAAGCAAGTACACCACAAAGAGAACACAGAGCCGGAAGAGCCTCAGCT
TAAGGGTATAGTTACCAAGCTATACAGCCGACAAGGCTACCACTTGCAGCTGCAGGCGGATGGAACCATT
GATGGCACCAAAGATGAGGACAGCACTTACACTCTGTTTAACCTCATCCCTGTGGGTCTGCGAGTGGTGG
CTATCCAAGGAGTTCAAACCAAGCTGTACTTGGCAATGAACAGTGAGGGATACTTGTACACCTCGGAACT
TTTCACACCTGAGTGCAAATTCAAAGAATCAGTGTTTGAAAATTATTATGTGACATATTCATCAATGATA
TACCGTCAGCAGCAGTCAGGCCGAGGGTGGTATCTGGGTCTGAACAAAGAAGGAGAGATCATGAAAGGCA
ACCATGTGAAGAAGAACAAGCCTGCAGCTCATTTTCTGCCTAAACCACTGAAAGTGGCCATGTACAAGGA
GCCATCACTGCACGATCTCACGGAGTTCTCCCGATCTGGAAGCGGGACCCCAACCAAGAGCAGAAGTGTC
TCTGGCGTGCTGAACGGAGGCAAATCCATGAGCCACAATGAATCAACGTAG

Translation (226 aa):
MLRQDSIQSAELKKKESPFRAKCHEIFCCPLKQVHHKENTEPEEPQLKGIVTKLYSRQGYHLQLQADGTI
DGTKDEDSTYTLFNLIPVGLRVVAIQGVQTKLYLAMNSEGYLYTSELFTPECKFKESVFENYYVTYSSMI
YRQQQSGRGWYLGLNKEGEIMKGNHVKKNKPAAHFLPKPLKVAMYKEPSLHDLTEFSRSGSGTPTKSRSV
SGVLNGGKSMSHNEST


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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