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Report for CCDS38363.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38363.1 Public Mus musculus 2 Gm14391 23 108 98 CCDS HistoryNCBI Gene:665001Re-query CCDS DB by CCDS ID:38363.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38363.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109058.8 ENSMUSP00000104686.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109058.8Link to Ensembl Protein Viewer:ENSMUSP00000104686.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000109058Re-query CCDS DB by Protein ID:ENSMUSP00000104686
Original member Current member EBI ENSMUST00000165892.7 ENSMUSP00000127636.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000165892.7Link to Ensembl Protein Viewer:ENSMUSP00000127636.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000165892Re-query CCDS DB by Protein ID:ENSMUSP00000127636
Original member Current member NCBI NM_001099308.2 NP_001092778.1 Accepted alive Link to Nucleotide Sequence:NM_001099308.2Link to Protein Sequence:NP_001092778.1Re-query CCDS DB by Nucleotide ID:NM_001099308Re-query CCDS DB by Protein ID:NP_001092778Link to BLAST:NP_001092778.1

Chromosomal Locations for CCDS 38363.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 175194914 175196387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 175197545 175197605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 175197807 175197933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 175203059 175203061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1665 nt):
ATGGATTTAGTCACCTATGATGACGTGCAGGTGAACTTCACTCAGGATGAGTGGGCTTTGCTGGATCCTT
CTCAGAAGAGTCTCTACAAAGATGTGATGCTAGAGACCTATAGGAATCTCACAGCTATAGGTTACATTTG
GGAAGAACATACGATTGAAGACCATTTTCAAACTTCTAGAAGTCATGGAAGGCATGAAAGAAGTTGTTCT
GCAGAGCAACCCTCTGAGTTTATTCAATGTGGTAAAGCCTTTGCATATGAGAGTGGTAGACAAAGGCATC
AAATTAAACATAATGGAGAGAAACACCATGACTGTAACCAATGTGGTAAGGACTTTAGAACATGGAATGT
CCTGCAAATACATAAGCGAACACATACAGGAGAGAAACCCTATGACTGTAAACAATGTGGTAAAGTCTTT
GCAAGAAGCTGTCATCTCCAAATACATAATCGAACACATGCAGGAGAGAAACAGTATGAATGTAACCAAT
GTGGTAAAGCTTTGAAAAGAAGGAGTGACCTCCAAATCCATAAGCGAACACATACAGGAGAGAAACCCTA
TGAATGTAACCAATGTGGAAAAGCCTTTGCAAGTAGTGGTGACCTCCAACAACATAAACGAACACATACA
GGAGAGAAACCCTATGAATGTAAACAATGTGGTAAAGCCTTTTCAGAATGCAGTCATCTCCGAATACATA
AGCGAACACATACAGGAGAGAAACCCTATGAATGTAAACAATGTGGTAAAGCCTTTGCACATAGCAGTCA
TCTCCACAAACATGAGCGAACACATACAGGAGACAAACCCTATGAATGTAACCAATGTGGTAAAGCCTTT
GCAGTAATCTATACTCTCCAAATGCATAAGCGAACACATACAGGAGACAAACCCTATGAATGTAACCAAT
GTGGTAAAGCCTTTGCAGTAATCTATACTCTCCAAATGCATAAGCGAACACATACAGGAGACAAACCCTA
TGAATGTAACCAATGTGGTAAAGCCTTTGCAGTAATCTATACTCTCCAAAGGCATAAGCAAACACATACA
GGAGAGAAACCCTATAAATGTAAACAATGTGGTAAAGCCTTTACAAGAAGCTGTCATCTCCGAATACATA
AGCGAACACATACAGGAGAGAAACCCTATGAATGTAACCAATGTGGAAAAGCCTTTGCAAGAAGTGGTGA
CCTCCAAAAACATAAACGAACACATACAGGAGAGAAACCCTATGAATGTAAACAATGTGGTAAAGCCTTT
GCACATAGCAGTCATCTCCACAAACATGAGCGAACACATACAGGAGACAAACCCTATGAATGTAACCAAT
GTGGTAAAGCCTTTGCAGAAAGCAGTACTCTCCAAATCCATAACCGAACACATACAGGAGAGAAACCCTA
TGAATGTAACCAATGTGGTAAAGCTTTTATAACAAGGAGAGTCCTCCAAATACATAAGCGAACACATACC
GGAGAGAAACCATATGAATGTAAACAATGTGGTAAAGCCTTCGCAAGCAGTAGTGACCTCCAAAAACATA
AACGAACACATTCAGGAGCGAAACCCTATGAATGTAAACAATGTGGTAAAGCTTTTGCACAAAGCAGTCA
TCTCCGAATACATAAGCAAACACATACAGGAGAGAGACCCTATGAATGTAACTAG

Translation (554 aa):
MDLVTYDDVQVNFTQDEWALLDPSQKSLYKDVMLETYRNLTAIGYIWEEHTIEDHFQTSRSHGRHERSCS
AEQPSEFIQCGKAFAYESGRQRHQIKHNGEKHHDCNQCGKDFRTWNVLQIHKRTHTGEKPYDCKQCGKVF
ARSCHLQIHNRTHAGEKQYECNQCGKALKRRSDLQIHKRTHTGEKPYECNQCGKAFASSGDLQQHKRTHT
GEKPYECKQCGKAFSECSHLRIHKRTHTGEKPYECKQCGKAFAHSSHLHKHERTHTGDKPYECNQCGKAF
AVIYTLQMHKRTHTGDKPYECNQCGKAFAVIYTLQMHKRTHTGDKPYECNQCGKAFAVIYTLQRHKQTHT
GEKPYKCKQCGKAFTRSCHLRIHKRTHTGEKPYECNQCGKAFARSGDLQKHKRTHTGEKPYECKQCGKAF
AHSSHLHKHERTHTGDKPYECNQCGKAFAESSTLQIHNRTHTGEKPYECNQCGKAFITRRVLQIHKRTHT
GEKPYECKQCGKAFASSSDLQKHKRTHSGAKPYECKQCGKAFAQSSHLRIHKQTHTGERPYECN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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