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Report for CCDS24528.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24528.1 Public Mus musculus 11 Efcab9 23 108 98 CCDS HistoryNCBI Gene:69306Re-query CCDS DB by CCDS ID:24528.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24528.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000054327.2 ENSMUSP00000060205.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000054327.2Link to Ensembl Protein Viewer:ENSMUSP00000060205.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000054327Re-query CCDS DB by Protein ID:ENSMUSP00000060205
Original member Current member NCBI NM_027031.3 NP_081307.2 Accepted alive Link to Nucleotide Sequence:NM_027031.3Link to Protein Sequence:NP_081307.2Re-query CCDS DB by Nucleotide ID:NM_027031Re-query CCDS DB by Protein ID:NP_081307Link to BLAST:NP_081307.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081307.2 216 Q9DAM2 216 100% 0 0

Chromosomal Locations for CCDS 24528.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 32522795 32522983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 32523526 32523702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 32524392 32524540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 32527385 32527520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (651 nt):
ATGAAACTGACTCCGGGGTGTTTTCTGTGGTACCTTTACATGGACAAAATCTACTGCTTACTGTCTTTGA
GAAACGTGAAAGCCTTGATGGTGTACTTTCATCTTCTGGATGTGCACCACAGGAACACCTTGAATGATGT
GCTCTTCTTTCATTTCCTCCAGCACGTGACTAACCTGAACAAGTCACAGATCGGGATGATATTTGACCTC
CTGGACTGGACAGCTGTAGGAGAGATTGGTTTTGACCAGTTCTATGTGTTGATTTGCATACTGCTGGCAC
ATCAGGACCATCTGGAAGACCACTTTATGTACCGCCATTCCCGGCCAGTCTTTGAGCTGCTTGATCTGGA
CGGGGAGATGAATATAGGTGCGGCCAATTTCCAAAACTACAGATTTCTCTTCAATATTAAAAAGCAGGAA
CTCCGAGACCTTTTCCATGACTTTGACATCACAGGTGACCGACTGCTTAATTACAAGGAATTTAAGCTGT
ACACAATCTTCTGCACCGACAAATCCATAGACAGAAAGAAAAGGAGGAAAGACAGAGAGGCAGCGAGAGA
GAGAGAAAAAGAGAAAGGGAAAGATAAAGAGAAGTATCTTCATCTCAAGAAGATATATTCATCTATGTTA
AGCCACAGGAGTATCCTGTGA

Translation (216 aa):
MKLTPGCFLWYLYMDKIYCLLSLRNVKALMVYFHLLDVHHRNTLNDVLFFHFLQHVTNLNKSQIGMIFDL
LDWTAVGEIGFDQFYVLICILLAHQDHLEDHFMYRHSRPVFELLDLDGEMNIGAANFQNYRFLFNIKKQE
LRDLFHDFDITGDRLLNYKEFKLYTIFCTDKSIDRKKRRKDREAAREREKEKGKDKEKYLHLKKIYSSML
SHRSIL


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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