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Report for CCDS59775.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
59775.1 Public Mus musculus X Cldn34c4 23 108 98 CCDS HistoryNCBI Gene:73934Re-query CCDS DB by CCDS ID:59775.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 13, NCBI annotation release 103, Ensembl annotation release 72

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 59775.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000052500.5 ENSMUSP00000062601.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000052500.5Link to Ensembl Protein Viewer:ENSMUSP00000062601.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000052500Re-query CCDS DB by Protein ID:ENSMUSP00000062601
Original member Current member NCBI NM_001281537.1 NP_001268466.1 Accepted alive Link to Nucleotide Sequence:NM_001281537.1Link to Protein Sequence:NP_001268466.1Re-query CCDS DB by Nucleotide ID:NM_001281537Re-query CCDS DB by Protein ID:NP_001268466Link to BLAST:NP_001268466.1

Chromosomal Locations for CCDS 59775.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 127721207 127721845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (639 nt):
ATGGTCTTCTTCAACAAGTCTGCCAATTACCAAATAAGAGGTTTCGCCTTGGCCACCATTGCATGGATAA
TGTGCAGCACATCTATGGGCCTTCCAGAATGGCGAATTTGGTATTTCGAGGAACCCATGGTTTCCTCCCC
AAACATGGCTTTTATAGGTATGTGGAGGGCCAGTATCTGCAACCACGTTGACAACTCCAGCCACAAGAGT
GTTTGCCAGCACTACTCCTACCATGATGCCCTCGTTCCTTTGGACATTCGGTTAGCGCAACATCTGCTCC
TGGTTGCAAACATTATTGGTCTGATTGGGACAGTTTGTGCTGTCTTTGCTCTACAGCAGTTATACACAGA
GAAACTGGAGACAAATAATGACGACAATCCATTTCTTCTTTCAGCTGTTCTCAACGCTGTTGCTAGCACC
TTTATTTTTCTTGCTGTTATGTGTAATTTCTACTCTGTGCCCGGCAAGGAAGGGTTAAGTTTCCTGCTTT
CTTTACAAATGCCAGTTTTTCCATATGCTCAAAGAGCAGGAAGTGCCATGGGAGTGGCAAGCATATCTGC
ACTATTGTTTTTATTAAGTGCATTAAGTTTTATTTCTTACAGTCCTTCAATGGAAAAAGGGAAAATTCCC
CTTGTTTGA

Translation (212 aa):
MVFFNKSANYQIRGFALATIAWIMCSTSMGLPEWRIWYFEEPMVSSPNMAFIGMWRASICNHVDNSSHKS
VCQHYSYHDALVPLDIRLAQHLLLVANIIGLIGTVCAVFALQQLYTEKLETNNDDNPFLLSAVLNAVAST
FIFLAVMCNFYSVPGKEGLSFLLSLQMPVFPYAQRAGSAMGVASISALLFLLSALSFISYSPSMEKGKIP
LV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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