NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS9984.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9984.1 Public Homo sapiens 14 XRCC3 24 110 108 CCDS HistoryNCBI Gene:7517Re-query CCDS DB by CCDS ID:9984.1See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9984.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000352127.11 ENSP00000343392.7 Accepted alive Link to Ensembl Transcript Viewer:ENST00000352127.11Link to Ensembl Protein Viewer:ENSP00000343392.7Re-query CCDS DB by Nucleotide ID:ENST00000352127Re-query CCDS DB by Protein ID:ENSP00000343392
Original member Current member EBI ENST00000554913.5 ENSP00000451362.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000554913.5Link to Ensembl Protein Viewer:ENSP00000451362.1Re-query CCDS DB by Nucleotide ID:ENST00000554913Re-query CCDS DB by Protein ID:ENSP00000451362
Original member Current member EBI ENST00000553264.5 ENSP00000451974.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000553264.5Link to Ensembl Protein Viewer:ENSP00000451974.1Re-query CCDS DB by Nucleotide ID:ENST00000553264Re-query CCDS DB by Protein ID:ENSP00000451974
Original member Current member EBI ENST00000555055.6 ENSP00000452598.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000555055.6Link to Ensembl Protein Viewer:ENSP00000452598.1Re-query CCDS DB by Nucleotide ID:ENST00000555055Re-query CCDS DB by Protein ID:ENSP00000452598
Original member Current member NCBI NM_001100118.2 NP_001093588.1 Accepted alive Link to Nucleotide Sequence:NM_001100118.2Link to Protein Sequence:NP_001093588.1Re-query CCDS DB by Nucleotide ID:NM_001100118Re-query CCDS DB by Protein ID:NP_001093588Link to BLAST:NP_001093588.1
Original member Current member NCBI NM_001100119.2 NP_001093589.1 Accepted alive Link to Nucleotide Sequence:NM_001100119.2Link to Protein Sequence:NP_001093589.1Re-query CCDS DB by Nucleotide ID:NM_001100119Re-query CCDS DB by Protein ID:NP_001093589Link to BLAST:NP_001093589.1
Original member Current member NCBI NM_001371229.1 NP_001358158.1 Accepted alive Link to Nucleotide Sequence:NM_001371229.1Link to Protein Sequence:NP_001358158.1Re-query CCDS DB by Nucleotide ID:NM_001371229Re-query CCDS DB by Protein ID:NP_001358158Link to BLAST:NP_001358158.1
Original member Current member NCBI NM_001371231.1 NP_001358160.1 Accepted alive Link to Nucleotide Sequence:NM_001371231.1Link to Protein Sequence:NP_001358160.1Re-query CCDS DB by Nucleotide ID:NM_001371231Re-query CCDS DB by Protein ID:NP_001358160Link to BLAST:NP_001358160.1
Original member Current member NCBI NM_001371232.1 NP_001358161.1 Accepted alive Link to Nucleotide Sequence:NM_001371232.1Link to Protein Sequence:NP_001358161.1Re-query CCDS DB by Nucleotide ID:NM_001371232Re-query CCDS DB by Protein ID:NP_001358161Link to BLAST:NP_001358161.1
Original member Current member NCBI NM_005432.4 NP_005423.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005432.4Link to Protein Sequence:NP_005423.1Re-query CCDS DB by Nucleotide ID:NM_005432Re-query CCDS DB by Protein ID:NP_005423Link to BLAST:NP_005423.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001093588.1 346 O43542 346 100% 0 0
NP_001093589.1 346 O43542 346 100% 0 0
NP_001358158.1 346 O43542 346 100% 0 0
NP_001358160.1 346 O43542 346 100% 0 0
NP_001358161.1 346 O43542 346 100% 0 0
NP_005423.1 346 O43542 346 100% 0 0

Chromosomal Locations for CCDS 9984.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 103698798 103699017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 103699133 103699179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 103699364 103699576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 103703173 103703327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 103707003 103707215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 103708522 103708659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 103711033 103711087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1041 nt):
ATGGATTTGGATCTACTGGACCTGAATCCCAGAATTATTGCTGCAATTAAGAAAGCCAAACTGAAATCGG
TAAAGGAGGTTTTACACTTTTCTGGACCAGACTTGAAGAGACTGACCAACCTCTCCAGCCCCGAGGTCTG
GCACTTGCTGAGAACGGCCTCCTTACACTTGCGGGGAAGCAGCATCCTTACAGCACTGCAGCTGCACCAG
CAGAAGGAGCGGTTCCCCACGCAGCACCAGCGCCTGAGCCTGGGCTGCCCGGTGCTGGACGCGCTGCTCC
GCGGTGGCCTGCCCCTGGACGGCATCACTGAGCTGGCCGGACGCAGCTCGGCAGGGAAGACCCAGCTGGC
GCTGCAGCTCTGCCTGGCTGTGCAGTTCCCGCGGCAGCACGGAGGCCTGGAGGCTGGAGCCGTCTACATC
TGCACGGAAGACGCCTTCCCGCACAAGCGCCTGCAGCAGCTCATGGCCCAGCAGCCGCGGCTGCGCACTG
ACGTTCCAGGAGAGCTGCTTCAGAAGCTCCGATTTGGCAGCCAGATCTTCATCGAGCACGTGGCCGATGT
GGACACCTTGTTGGAGTGTGTGAATAAGAAGGTCCCCGTACTGCTGTCTCGGGGCATGGCTCGCCTGGTG
GTCATCGACTCGGTGGCAGCCCCATTCCGCTGTGAATTTGACAGCCAGGCCTCCGCCCCCAGGGCCAGGC
ATCTGCAGTCCCTGGGGGCCACGCTGCGTGAGCTGAGCAGTGCCTTCCAGAGCCCTGTGCTGTGCATCAA
CCAGGTGACAGAGGCCATGGAGGAGCAGGGCGCAGCACACGGGCCGCTGGGGTTCTGGGACGAACGTGTT
TCCCCAGCCCTTGGCATAACCTGGGCTAACCAGCTCCTGGTGAGACTGCTGGCTGACCGGCTCCGCGAGG
AAGAGGCTGCCCTCGGCTGCCCAGCCCGGACCCTGCGGGTGCTCTCTGCCCCCCACCTGCCCCCCTCCTC
CTGTTCCTACACGATCAGTGCCGAAGGGGTGCGAGGGACACCTGGGACCCAGTCCCACTGA

Translation (346 aa):
MDLDLLDLNPRIIAAIKKAKLKSVKEVLHFSGPDLKRLTNLSSPEVWHLLRTASLHLRGSSILTALQLHQ
QKERFPTQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQLCLAVQFPRQHGGLEAGAVYI
CTEDAFPHKRLQQLMAQQPRLRTDVPGELLQKLRFGSQIFIEHVADVDTLLECVNKKVPVLLSRGMARLV
VIDSVAAPFRCEFDSQASAPRARHLQSLGATLRELSSAFQSPVLCINQVTEAMEEQGAAHGPLGFWDERV
SPALGITWANQLLVRLLADRLREEEAALGCPARTLRVLSAPHLPPSSCSYTISAEGVRGTPGTQSH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH