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Report for CCDS37242.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37242.1 Public Mus musculus 16 Coro7 23 108 98 CCDS HistoryNCBI Gene:78885Re-query CCDS DB by CCDS ID:37242.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 37242.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038552.12 ENSMUSP00000048489.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038552.12Link to Ensembl Protein Viewer:ENSMUSP00000048489.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000038552Re-query CCDS DB by Protein ID:ENSMUSP00000048489
Original member Current member NCBI NM_030205.4 NP_084481.3 Accepted alive Link to Nucleotide Sequence:NM_030205.4Link to Protein Sequence:NP_084481.3Re-query CCDS DB by Nucleotide ID:NM_030205Re-query CCDS DB by Protein ID:NP_084481Link to BLAST:NP_084481.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084481.3 922 Q9D2V7 922 100% 0 0

Chromosomal Locations for CCDS 37242.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 4627494 4627499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4627610 4627696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4628184 4628275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4628676 4628811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4629056 4629172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4630188 4630277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4630364 4630505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4631449 4631534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4631811 4631915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4631987 4632129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4632219 4632305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4632413 4632521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4633255 4633430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4633714 4633837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4634299 4634430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4634589 4634681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4634762 4634907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4634985 4635042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4635384 4635438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4655010 4655092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4655548 4655634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4661865 4661915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4668744 4668820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4669858 4670041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4670502 4670572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4675763 4675837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4676936 4677032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4679552 4679611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2769 nt):
ATGAGTCGCTTCAAGGTGTCCAAGTTTCGGCATATGGAGGCCCGGCCGTCCCGCCGAGAGGCCTGGATCA
GTGATATTCGTGCTGTAACCACCCCCACATGCGGGAACCACATCAAATCAAGCTGCAGCTTGATCGCTTT
CAACTCTGACCGCCCAGGTGTATTGGGTGTCATATCTCTGGAAGGCCATGAGGAAAACAAGAGGCATGTG
ACCTACCTTGGCTGTCATTCAGACCTGGTCACTGACCTGGACTTCTCCCCCTTTGATGACTTCCTCCTGG
CCTCCGGTTCAGCTGACAGGACGATAAAGCTTTGGCGTCTGTCTGGCACTGGAGAAGCGCTTCCCTCTGT
GCCTGGAGTGGTGCTGGGTCCTGAGGAGCTGCCAGTGGAGGTACTGCAGTTCCACCCCACTGTAGACGGT
GTTCTGGTGAGCACAGCTGGCAAGACTGTGAAGGTCTGGGATGTAGCCAAGCAGCAGCCCCTGACAGAGT
TGGAGGCCCACAAGGACCTGGTGCAGAGTGCTGTTTGGAGCCGGGATGGAGCCATTGTGGGCACAGCATG
TAAGGACAAGCAGCTTCGGATCTTTGACCCCAGAGCAAGAACCCAGGCTTCTCAGAGCACACAGGCCCAT
GAGAACAACAGAGACATCCGGTTGGCATGGACAGGCATTCAAGAGCACCTTGTGTCCACTGGATTCAACC
AGATGCGTGAGCGAGAAGCGAAGCTCTGGGATACCCGGCTCTTCAGCAGTGCCCTGGCCTCCGTCACCCT
GGACACCTCTCCTGGGCCTCTGATACCTCTGCTGGATCCAGACTCTGGGCTATTGGTCCTGGCAGGAAAG
GGTGAGAATCAGCTATACTGTTACGAGGTGACCCCACAGCAGCCTGCACTGAGCCCAGTGACTCAGTGCA
TTCTGGAGAATGTACTACGAGGAGCAGCCCTTGTTCCCCGGCGAGCACTGGCTGTCATGAGTTGCGAGGT
GCTCCAAGTCCTGCAGCTGAGTGACACAGCCATCATACCCATCAGCCACCACGTGCCCCGAAAAGCTGTA
GAGTTCCATGAGGACCTGTTTCCAGACACAGCCGGTTCTGTGCCTGCTTCTGATGCCCACATGTGGTGGG
CTGGGGACAACCAGCAGGTTCAGAAGGTCAGCCTCAACCCAGCTCGCCGACCCCACCCTTGCTTCACGTC
CTCCCTGGTGCCCACTATGGAACCGGCCCCTGACATGGTCCAGCCTGCAGAGATGCCCAGAGCTGACACA
GACCTAAGTGAGGGCTTTTCTTCCCCTAGCTCACTGATGTCACCCTCCACACCATCCAGTCTGGGGCCTT
CACTCTCCAGCACGAGCGGCATTGGTACCAGCCCCAGTCAGAGGTCCCTTCAGAGTCTGCTGGGCCCCAG
TTCTAAATTTCGCCACACTCAGGGCAGCCTCCTCCACCGCGACAGTCACATCACCAACCTTAAGGGACTC
AACCTCACAACACCTGGTGAGAGTGATGGCTTCTGCGCTAACCGGCTGCGTGTGGCTGTTCCCCTGCTCA
GCAGTGGTGGGCAGGTAGCTGTGCTTGAGCTGCAGAAGCCAGGCCGCCTGCCTGACACAGCATTGCCTAC
ACTTCAGAATGGGACAGCTGTAATGGATCTGGTCTGGGATCCCTTTGACCCACACCGGCTTGCTGTGGCT
GGGGAGGATGCCCGGATCCGACTATGGCGGGTGCCCCCTGGTGGCCTCGAGAATGTTCTCACCACACCTG
AGACTGTGCTCACAGGCCACACAGAAAAGATCTACTCTCTGCGCTTCCACCCCCTGGCTGCCGATGTACT
GGCTTCCAGTTCCTATGATCTAACCGTTCGCATCTGGGACCTTCAGACTGGAGCTGAGCGGCTGAAACTG
CAGGGCCATCAGGACCAGATTTTTAGCTTGGCCTGGAGTCCAGATGGAAAGCAACTGGCCACCGTATGCA
AGGATGGGCATGTGCGGGTCTATGAACCCCGCAGCAGCCCTTTACCCCTACAGGAAGGCCCAGGACCTGA
AGGTGGCCGCGGAGCCCGCATTGTCTGGGTGTGTGATGGTGGTTGCCTGCTGGTTTCTGGCTTTGACAGC
CGGAGTGAACGCCAGCTACAGTTGTACATAGCTGACGCCCTGGCACAAGGCCCTTCAGCACTGCTGGGCC
TCGATGTAGCTCCCTCGACCCTGCTTCCCAGCTATGACCCTGACACAGGCCTGGTGCTTCTCACTGGCAA
GGGTGATACCCGTGTGTTCCTGTATGAGGTGCTCCCGGAGGCCCCTTTCTTCCTGGAGTGCAACAGCTTC
ACATCACCTGACCCTCACAAGGGTTTTGTCCTTCTGCCCAAGACTGAGTGTGACATTCAGGATGTGGAGT
TTGCCCGATGCCTGCGGCTGCGCCAGACCTCCTTGGAGCCTGTTGCTTTCCGGCTGCCCCGGGTCAGAAA
AGAATTCTTCCAGGATGATGTGTTCCCGGACACAGCTGTGACCTGGGAGCCAGCACTCAGTGCCAAAGCC
TGGTTTGAGGGTGCTAATGGACAGCCCCGGCTACTGAGTTTGCAGCCCCCTGGCATGACCCCAGTGAGCC
AGGCCCCCCGTGAGGTCCCTGCCCGAAGAGCCCCATCTTCAGCACAATACTTGGAAGAGAAGTCTGACCA
ACAAAAGAAAGAAGAGCTGCTGAATGCCATGGTAGCAAAGCTGGGGAACCGAGAAGACCCACTGCCACAG
GACTCCTTTGAAGGGGTGGATGAAGATGAGTGGGACTAG

Translation (922 aa):
MSRFKVSKFRHMEARPSRREAWISDIRAVTTPTCGNHIKSSCSLIAFNSDRPGVLGVISLEGHEENKRHV
TYLGCHSDLVTDLDFSPFDDFLLASGSADRTIKLWRLSGTGEALPSVPGVVLGPEELPVEVLQFHPTVDG
VLVSTAGKTVKVWDVAKQQPLTELEAHKDLVQSAVWSRDGAIVGTACKDKQLRIFDPRARTQASQSTQAH
ENNRDIRLAWTGIQEHLVSTGFNQMREREAKLWDTRLFSSALASVTLDTSPGPLIPLLDPDSGLLVLAGK
GENQLYCYEVTPQQPALSPVTQCILENVLRGAALVPRRALAVMSCEVLQVLQLSDTAIIPISHHVPRKAV
EFHEDLFPDTAGSVPASDAHMWWAGDNQQVQKVSLNPARRPHPCFTSSLVPTMEPAPDMVQPAEMPRADT
DLSEGFSSPSSLMSPSTPSSLGPSLSSTSGIGTSPSQRSLQSLLGPSSKFRHTQGSLLHRDSHITNLKGL
NLTTPGESDGFCANRLRVAVPLLSSGGQVAVLELQKPGRLPDTALPTLQNGTAVMDLVWDPFDPHRLAVA
GEDARIRLWRVPPGGLENVLTTPETVLTGHTEKIYSLRFHPLAADVLASSSYDLTVRIWDLQTGAERLKL
QGHQDQIFSLAWSPDGKQLATVCKDGHVRVYEPRSSPLPLQEGPGPEGGRGARIVWVCDGGCLLVSGFDS
RSERQLQLYIADALAQGPSALLGLDVAPSTLLPSYDPDTGLVLLTGKGDTRVFLYEVLPEAPFFLECNSF
TSPDPHKGFVLLPKTECDIQDVEFARCLRLRQTSLEPVAFRLPRVRKEFFQDDVFPDTAVTWEPALSAKA
WFEGANGQPRLLSLQPPGMTPVSQAPREVPARRAPSSAQYLEEKSDQQKKEELLNAMVAKLGNREDPLPQ
DSFEGVDEDEWD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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