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Report for CCDS88065.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88065.1 Public Mus musculus 10 Prdm4 23 108 98 CCDS HistoryNCBI Gene:72843Re-query CCDS DB by CCDS ID:88065.1Re-query CCDS DB by GeneID:72843See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88065.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037646.8 ENSMUSP00000041942.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037646.8Link to Ensembl Protein Viewer:ENSMUSP00000041942.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000037646Re-query CCDS DB by Protein ID:ENSMUSP00000041942
Original member Current member NCBI NM_001302886.1 NP_001289815.1 Accepted alive Link to Nucleotide Sequence:NM_001302886.1Link to Protein Sequence:NP_001289815.1Re-query CCDS DB by Nucleotide ID:NM_001302886Re-query CCDS DB by Protein ID:NP_001289815Link to BLAST:NP_001289815.1

Chromosomal Locations for CCDS 88065.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 85893130 85893439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 85899175 85899343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 85900842 85901156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 85901704 85901831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 85902927 85903012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 85904131 85904249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 85905349 85905498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 85907276 85908070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 85910223 85910408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 85912838 85912970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2391 nt):
ATGAATGACATGAACTTGAGCCCAGTGGGGATGGAGCAGCTGTCTTCATCCTCTGTGAGCAATGCCCTGC
CAGTCTCAGGAAGTCACCTGGGCTTGGCTGCCTCTCCCTCTCACAGTGCCATCCCTGCCCCAGGACTTCC
AGTGGCAATTCCAAACCTGGGTCCCTCCCTGAGCTCTCTGCCTTCTGCCTTGTCTCTTATGCTCCCCGTG
GGCATTGGAGACCGAGGAGTGATGTGTGGGCTACCTGAGAGGAACTACACCCTACCTCCACCTCCTTACC
CTCACCTAGAGAGCAGTTACTTCAGAACCATTCTACCTGGCATTTTATCTTATTTAGCTGACAGACCACC
TCCTCAGTATATCCACCCCAACTCTATAAATGTTGATGGAAATACAGCATTATCTATCACCAACAACCCT
TCAGCACTAGATCCGTATCAGGCCAATGGAAATGTTGGATTAGAACTAGGCATTGTTTCAATAGACTCTC
GCTCTGTAAACACACATGGTGCCCAAAGTCTTCATCCTAATGATGGCCACGAAGTAGCATTGGACACAAC
AATCACCATGGAGAATGTTTCTAGGGTTACCAGCCCAATCTCCACAGATGGAATGGCAGAGGAGCTTACA
ATGGACGGTGTTACAGGAGAGCATCCCCAAATCCCAAATGGCTCCAGAAGTCATGAGCCTCTCTCTGTGG
ATTCTGTGAGCAACAGCCTTACAGCAGAAGCTGTAGGACATGGTGGTGTGATACCCATTCACGGGAATGG
TCTGGAGCTTCCTGTGGTCATGGAAACTGACCACATTGCAAACCGGGTCAATGGGATGTCTGACAGTACC
CTCAGTGACTCCATCCACACCGTGGCCATGAGCACCAACTCTGTAAGCGTGGCACTCTCTACCTCACACA
ACCTGGCCTCCCTAGAGTCTGTTTCCCTCCATGAAGTTGGCCTTAGCCTAGAGCCTGTGGCTGTCTCTTC
TATCACGCAGGAGGTTGCCATGGGGACAGGTCATGTAGATGTGTCCTCAGACAGCTTGTCTTTTGTACCA
TCTTCACTGCAAATGGAAGACTCCAATTCAAACAAGGAAAACATGGCAACCTTGTTTACAATTTGGTGCA
CTCTTTGTGACCGAGCCTACCCCTCAGATTGCCCTGATCATGGACCAGTGACTTTTGTTCCTGACACACC
AATAGAGAGCAGAGCAAGACTATCCCTCCCGAAGCAGCTTGTTCTCCGCCAGTCCATCGTGGGAACAGAT
GTTGGTGTATGGACTGCAGAAACCATTCCTGTGCGGACTTGCTTCGGACCTCTAATTGGTCAGCAGAGTC
ACTCCTTGGAAGTAGCAGAGTGGACAGACAAGGCAGTTAACCATGTCTGGAAGATATACCACACTGGTGT
CCTGGAGTTCTGTATCATTACAACCGATGAGAATGAGTGTAATTGGATGATGTTTGTGCGCAAAGCCAGG
AACCGTGAAGAACAGAATTTGGTGGCCTATCCCCATGATGGGAAAATCTATTTCTGTACCTCACAAGACA
TCCCCCCTGAAAGTGAGCTGCTTTTCTATTACAGCCGGAATTACGCTCAACAGATAGGTGTTCCTGAACA
CCCAGATGTGCACCTCTGTAACTGTGGCAAGGAGTGCAGTTCCTATTCAGAGTTCAAAGCTCATCTGACC
AGCCATATCCACAATCATCTCCCTAGCCAGGGCCACAGCAGCAGCCATGGGCCAAGCCACAGCAAGGAAA
GGAAGTGGAAGTGTTCAATGTGCCCCCAGGCTTTTATCTCGCCTTCCAAACTCCACGTTCACTTTATGGG
CCACATGGGTATGAAGCCCCACAAGTGTGATTTTTGTAGCAAGGCTTTTAGTGATCCAAGCAACCTACGG
ACACACCTCAAAATACATACAGGTCAGAAAAATTATAGGTGTACTTTGTGTGACAAGTCTTTCACGCAGA
AGGCTCACCTGGAGTCTCACATGGTCATCCACACGGGTGAGAAGAATCTCAAGTGTGATTACTGTGACAA
GCTGTTCATGCGGAGACAGGACCTCAAGCAGCACGTGCTCATCCACACGCAAGAACGCCAGATCAAGTGT
CCGAAGTGTGATAAACTGTTCTTGAGAACAAACCACTTGAAGAAGCATCTCAATTCTCACGAAGGAAAAC
GAGATTATGTCTGCGAAAAATGTACAAAGGCTTATCTAACCAAGTACCATCTCACTCGCCACCTGAAGAC
CTGCAAAGAGCCCAGCTCCAGCTCCTCTGCACAGGAGGAAGAGGATGATGAGTCGGAGGAAGAAGATCTC
GCAGACTCCATGAGGACAGAGGACTGCAGGATGGGCAGTGCTGTTTACTCAACAGACGAGTCTCTCTCCG
CACATAAATAG

Translation (796 aa):
MNDMNLSPVGMEQLSSSSVSNALPVSGSHLGLAASPSHSAIPAPGLPVAIPNLGPSLSSLPSALSLMLPV
GIGDRGVMCGLPERNYTLPPPPYPHLESSYFRTILPGILSYLADRPPPQYIHPNSINVDGNTALSITNNP
SALDPYQANGNVGLELGIVSIDSRSVNTHGAQSLHPNDGHEVALDTTITMENVSRVTSPISTDGMAEELT
MDGVTGEHPQIPNGSRSHEPLSVDSVSNSLTAEAVGHGGVIPIHGNGLELPVVMETDHIANRVNGMSDST
LSDSIHTVAMSTNSVSVALSTSHNLASLESVSLHEVGLSLEPVAVSSITQEVAMGTGHVDVSSDSLSFVP
SSLQMEDSNSNKENMATLFTIWCTLCDRAYPSDCPDHGPVTFVPDTPIESRARLSLPKQLVLRQSIVGTD
VGVWTAETIPVRTCFGPLIGQQSHSLEVAEWTDKAVNHVWKIYHTGVLEFCIITTDENECNWMMFVRKAR
NREEQNLVAYPHDGKIYFCTSQDIPPESELLFYYSRNYAQQIGVPEHPDVHLCNCGKECSSYSEFKAHLT
SHIHNHLPSQGHSSSHGPSHSKERKWKCSMCPQAFISPSKLHVHFMGHMGMKPHKCDFCSKAFSDPSNLR
THLKIHTGQKNYRCTLCDKSFTQKAHLESHMVIHTGEKNLKCDYCDKLFMRRQDLKQHVLIHTQERQIKC
PKCDKLFLRTNHLKKHLNSHEGKRDYVCEKCTKAYLTKYHLTRHLKTCKEPSSSSSAQEEEDDESEEEDL
ADSMRTEDCRMGSAVYSTDESLSAHK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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