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Report for CCDS88216.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88216.1 Public Mus musculus 11 Rnf43 23 108 98 CCDS HistoryNCBI Gene:207742Re-query CCDS DB by CCDS ID:88216.1Re-query CCDS DB by GeneID:207742See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88216.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040089.4 ENSMUSP00000044241.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040089.4Link to Ensembl Protein Viewer:ENSMUSP00000044241.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000040089Re-query CCDS DB by Protein ID:ENSMUSP00000044241
Original member Current member NCBI NM_001363437.1 NP_001350366.1 Accepted alive Link to Nucleotide Sequence:NM_001363437.1Link to Protein Sequence:NP_001350366.1Re-query CCDS DB by Nucleotide ID:NM_001363437Re-query CCDS DB by Protein ID:NP_001350366Link to BLAST:NP_001350366.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001350366.1 657 Q5NCP0-2 657 100% 0 0

Chromosomal Locations for CCDS 88216.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 87727156 87727224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87727336 87727467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87728026 87728130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87729400 87729561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87730132 87730234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87731027 87732385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87734156 87734199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1974 nt):
ATGGCTGGTGAGCGAGGAGCCAACGCAGTACTCTTTGACATCACCGAGGATCGATCAGCTGCTGAGCAGC
TGCAGCAGCCCCTGGGGCTGACTAAGCCAGTGGTGCTGATCTGGGGTAGTGATGCTGCGAAGCTGATGGA
GTTTGTGTACAAGAATCGGAAGGCCTATGTGTGGATTGAGCTGAAGGAGCCCCCCGCCGGGGCAAACTAT
GACGTGTGGATCCTCCTGACCGTGGTGGGTACCGTCTTTGTGATCATCCTGGCCTCAGTGCTGCGCATCA
GGTGCCGCCCCCACCATAGCAGACCGGATCCTCTTCAGCAGCGGACAGCCCGGGCCATCAGCCAGCTGGC
CACCAGGAGGTACCAAGCCGGCTGTAGACGAGCCCGAGCCGAGTGGCCAGACTCGGGGAGTAGCTGCAGC
TCGACCCCCGTGTGTGCCATCTGTCTAGAAGAGTTCTCAGAGGGGCAGGAGCTCCGGGTCATTTCGTGCC
TCCACGAGTTTCATCGAACGTGTGTGGACCCCTGGCTATACCAGCATCGGACTTGCCCCCTCTGCATGTT
CAACATCGTAGAGGGAGATTCATTTTCCCAGGCCCCGGCAGCCTCTCCATCTTACCAGGAACCAGGCAGA
AGACTCCACCTCATTCGCCAGCATCCTGGCCACGCCCACTATCATCTTCCTTCTGCCTATCTGTTGGGGC
CTTCCAGGACTTCAGTCGCCCGGACCCCAAGACCTAGACCCTTTCTGCCCTCCCAGGAGCCAAGCATGGG
CTCTCGGCATCAGCGCCTTCCCAGGACTTCACATCTCCGGGCCCCAGAAGAACAGCAGCACTTGGCGGTA
TCTCCACACCCCTATGCACAGGGCTGGGGGCTGAATCGCCTCCGATGTACCTCTCAGCATCCTGCAGCTT
GCCCAGTGGCCCTACGACGGGCCAGGCCTCATGAGAGCAGCGGGTCTGGAGAAAGCTACTGTACAGAACG
CAGCGGTTACTTGGCAGATGGGCCAGCCAGTGACTCCAGCTCAGGGCCCTGTCACGGCTCATCCAGTGAC
TCGGTGGTCAACTGCACGGACGTCAGCCTGCAGGGCATCCACGGCAGCAGCTCCACCTTCCGAAGCTCCC
TGAGCAGTGACTTTGACCCCTTGGTATACTGTAGTCCTGAAGGGGATCTCCAAGGGAAAGGGATACAACC
TAGTGTGACCTCTCGACCCCGCTCGCTGGACTCAGTGGTACCCAGGGGAGAGACCCAGGTTTCCAGCCAC
ATACACTATCACCGGCACCGCCACCACCACTACAAAAGGCAGTTCCAGTGGCATGGCAGGAAGCCTGGCC
CAGAAACTGGGATCCCACAGTCCATGCCTGCTGCTTCTCACACTCAGCTGGAGCCATCTCTCCCTGACCA
GCAGCTCATCACACCCAACCCAACAGCTTCTTCAATGCTTCCCAACCCACAACGGCCCAGGGCTCTTACA
GAGCCAGCCCCTGGCCTAGCAGAAGCTTCCAGCCCTAGCCCCAGTCCCAAACCTAACCCCAGCGGTCTTT
TGAACTTGCAGAAATCCAGCCTCACTGTCAGACACCCACACAGAAAACGGCGGGGTGGTCCCTCAGAACC
CCTGCCAACCTCTCTGCCCCCGGACTTGACTGTGCACACTGCTTGCCCGGTTTTCCCCCACTACAGTCCC
CGTCTGGCATACCCTTGGCCCCCAGAGGTTCATCCATTGATGTTCAGACCTCCAGGTCCGGATAGGAGGC
TGCTACATGAAGTCCCAGGCCCCTGTTACTCAAGTTCACAGCCAGTGTGGTTGTATCTGAATCCCTGCCA
GCCTCTGGGACCATGCTTACCTGGAGAGGGACATTCCAAGTGGACTTTTGACAGCCCAGAGGGCAGGAGA
TGTCCTTACTCACATTGCCAGGTGCTGCCAGCCCAACCTGGCTCGGAAGAGGAGCTGGAGGAGCTGTGCG
AGCAGGCTGTGTGA

Translation (657 aa):
MAGERGANAVLFDITEDRSAAEQLQQPLGLTKPVVLIWGSDAAKLMEFVYKNRKAYVWIELKEPPAGANY
DVWILLTVVGTVFVIILASVLRIRCRPHHSRPDPLQQRTARAISQLATRRYQAGCRRARAEWPDSGSSCS
STPVCAICLEEFSEGQELRVISCLHEFHRTCVDPWLYQHRTCPLCMFNIVEGDSFSQAPAASPSYQEPGR
RLHLIRQHPGHAHYHLPSAYLLGPSRTSVARTPRPRPFLPSQEPSMGSRHQRLPRTSHLRAPEEQQHLAV
SPHPYAQGWGLNRLRCTSQHPAACPVALRRARPHESSGSGESYCTERSGYLADGPASDSSSGPCHGSSSD
SVVNCTDVSLQGIHGSSSTFRSSLSSDFDPLVYCSPEGDLQGKGIQPSVTSRPRSLDSVVPRGETQVSSH
IHYHRHRHHHYKRQFQWHGRKPGPETGIPQSMPAASHTQLEPSLPDQQLITPNPTASSMLPNPQRPRALT
EPAPGLAEASSPSPSPKPNPSGLLNLQKSSLTVRHPHRKRRGGPSEPLPTSLPPDLTVHTACPVFPHYSP
RLAYPWPPEVHPLMFRPPGPDRRLLHEVPGPCYSSSQPVWLYLNPCQPLGPCLPGEGHSKWTFDSPEGRR
CPYSHCQVLPAQPGSEEELEELCEQAV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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