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Report for CCDS15904.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15904.1 Public Mus musculus 2 Aif1l 23 108 98 CCDS HistoryNCBI Gene:108897Re-query CCDS DB by CCDS ID:15904.1Re-query CCDS DB by GeneID:108897See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 15904.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000001920.12 ENSMUSP00000001920.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000001920.12Link to Ensembl Protein Viewer:ENSMUSP00000001920.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000001920Re-query CCDS DB by Protein ID:ENSMUSP00000001920
Original member Current member NCBI NM_145144.1 NP_660126.1 Accepted alive Link to Nucleotide Sequence:NM_145144.1Link to Protein Sequence:NP_660126.1Re-query CCDS DB by Nucleotide ID:NM_145144Re-query CCDS DB by Protein ID:NP_660126Link to BLAST:NP_660126.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_660126.1 150 Q9EQX4 150 100% 0 0

Chromosomal Locations for CCDS 15904.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 31950351 31950381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 31950529 31950590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 31962215 31962281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 31965071 31965112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 31969630 31969792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 31970903 31970990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (453 nt):
ATGTCGGTCGCACTCAGCAACAGGTTCCAAGGAGGGAAGGCGTTCGGTTTGCTCAAAGCCCGGCAGGAGA
AGAGGCTCGAGGAGATCAATCGGGAGTTCCTCTGTGACCAGAAGTACAGTGATGAAGAGAACCTGCCGGA
AAAGCTCGCAGCCTTCAAAGAGAAATACATGGAGTTTGACCTGAATAATGAAGGCGAGATTGATCTGATG
TCTTTAAAGAGGATGATGGAGAAGCTGGGGGTCCCCAAGACCCACCTGGAGATGAAGAAGATGATCTCGG
AGGTGACAGGGGGTGTCAGTGACACCATCTCCTACCGAGACTTTGTGAATATGATGCTGGGCAAGCGGTC
GGCTGTCCTCAAGCTGGTCATGATGTTTGAAGGAAAAGCCAACGAGAGCAGCCCGAAGCCAGCTGGCCCA
CCTCCAGAGCGAGACATCGCCAGCCTGCCTTGA

Translation (150 aa):
MSVALSNRFQGGKAFGLLKARQEKRLEEINREFLCDQKYSDEENLPEKLAAFKEKYMEFDLNNEGEIDLM
SLKRMMEKLGVPKTHLEMKKMISEVTGGVSDTISYRDFVNMMLGKRSAVLKLVMMFEGKANESSPKPAGP
PPERDIASLP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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