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Report for CCDS48686.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48686.1 Public Mus musculus 10 Lrriq1 23 108 98 CCDS HistoryNCBI Gene:74978Re-query CCDS DB by CCDS ID:48686.1Re-query CCDS DB by GeneID:74978See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48686.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020043.11 ENSMUSP00000020043.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020043.11Link to Ensembl Protein Viewer:ENSMUSP00000020043.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000020043Re-query CCDS DB by Protein ID:ENSMUSP00000020043
Original member Current member NCBI NM_001361058.1 NP_001347987.1 Accepted alive Link to Nucleotide Sequence:NM_001361058.1Link to Protein Sequence:NP_001347987.1Re-query CCDS DB by Nucleotide ID:NM_001361058Re-query CCDS DB by Protein ID:NP_001347987Link to BLAST:NP_001347987.1
Original member Current member NCBI NM_029134.2 NP_083410.1 Accepted alive Link to Nucleotide Sequence:NM_029134.2Link to Protein Sequence:NP_083410.1Re-query CCDS DB by Nucleotide ID:NM_029134Re-query CCDS DB by Protein ID:NP_083410Link to BLAST:NP_083410.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001347987.1 814 Q0P5X1-2 814 100% 0 0
NP_083410.1 814 Q0P5X1-2 814 100% 0 0

Chromosomal Locations for CCDS 48686.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 103214445 103216112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 103218078 103218152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 103221236 103221459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 103223693 103223810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 103224880 103224971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 103227176 103227302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 103234013 103234153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2445 nt):
ATGGAGGACAGTGACGACAGCGAGGCAAAGCTCAGAGAAGAAATCGAAGCTGAATTGGATAAAATCAGCA
TCTCTTCCTTGGAAAATGATGAGGTTGAAAATGATTCAGTGTCAGACACACAGAGTGACAGTAGTGACAC
TGATTTGCTTGAATTGCCAGAGTCAGTTCTTCATTATATCAACGTCATAAAGAACAAGAGTAAAACTGCT
GAAGAACTCATTCTTCAAGACGTAGAAGATACTGATATCTTCAGTGATTATAAGAAAGGTTGTAACCATG
GCACAGTGACTGACAGTCACATGCATTTGAGGACTGGGTCATTGCCGGAATCTAAAGCAAATGCTGAGCA
ATTAATGAAGATATTATCTGTAATAGAAAAGGAAGAATTTATGAGAAGTCTAGCTCCTTCTGCCAGGTGT
GTTTCCGTTCGTGAGATTATTACTCCTGACACACCCATGGATGAATATATTTTACCAGATGAGGCTGATT
TGAGTTTCGGATACTTTGAAGTAGAAGAAAGATGTAGAAAATCTTTTGAAGCTTGGCAGGACAAACAACA
AGAACTAGAAGAAAAGGATAAAGAAACTCTGGAAGCTCAGAATGAAAGAGAAAAGCGGACCTTTCAAGAG
GAAGACGAGAAGAGACAGTGCTGGATGAGACAGTTTGAAGTTGAAAAGAAACACTTAGAGGATCTTCAGA
AGCAAGACCAAGACAAAATGAATGATGAACTCCATAAAGAAGAGAAAATATGGAAAGAAAAATACAGACA
GCATGAGGAACATATCAGAAACTTGCACTTAAAAATGGAGGAGGAGAGAACAAGATTAAGTGAGCTACAA
GAAAAAGAAAAGGCACGTTTATTCAAACTGCGGTATGATGCAGCTGTAAAAATTCAAGCCACTTATAGAG
CATCAGTAACTTACCGAAAATATAGCCCAATCATAAAAGAGCAAATGGAAAAGAAGAGGAGGAGAGCACA
GGAGTTGAAAGAGAAGGAGGCAAAGATACGACAGAAGGAGGAAGAAAAGAGGAGGAGACTTGAAGAGGAG
CAGAGGGTAGAGGAGGAGAAGAAGAAGAAGATGCTGGAGGAGAGGAGGAGACGAGAGAGGGAATACGAAG
AGAAAAAGAGCATCCTGAGACAAGAGAGAGAAGAGCAACGAAGCAAGGAAGTGATAAGACTGAGGGAACA
TGCCCACTCGCCACTGATCATTACCTGTGCTTTAAAGAAAGGAGATTGCCATGGCAAGCAGCAAGCTATT
GCACATGTGCCAAAGGGTAAGGGTACTATAGCCAAAGAGTCAGTGGACAGCAACTCAAAGAAGCAAGAAG
ATGCTTGCCTCGCTCAGCAATTAAACAAGAGAGAAAACACACACGTGCAGCAGCTTGCGATGAAGAAATC
AACAGGAATAAAATTAAAACCAAACCAGGCAATTTTGGTAGAATTAAAAATGAACGAGAAAAATGAAAGT
TTACCAAAATTAAAAATCAATGAAAACTTATCAAAAAACCAATGTTCAGAACAACCTTCTGACCAAGAAT
TTAACGCTGAAAATGTAGACCAAAAAAATGAATTGGAAAACTCCAACCTAAAGGAAAGTGTGAATGAACA
GTACCCGTGGCAAGGACTAGAGTCAGATACTCAGACAGAGGAACATGTGGAGCATGTCAGGGAGGAGAAG
GTGGGACAAGAAACCGAAAAACTATTTGGATTCAATCAAGAAGTGAGTGCAGAAGACAGTAAACAAGCAC
AAGGAGTCATGGAGGAGACCCGGGAGGGATTGGCTGAAGAGATAGAAATCAAAGAGATGACACAGCAAGG
TGGGCCATCGGATGAGAATAATAGCTCACCTATTTCCATGCAGAAAAGCCTACCATCACTGACACCAGAC
AATCCTGAACCTGTAGAAAGAAGTGTAACACTAGAAGAAGACCAAGAGACTGATTTAAAATCAGAAAGAA
TTGAGGAAATCCCAGAAGAAGGTGTGCTGTCCTGTGATGCTGCAGTCATTAACGCAGATGCCTCTGTGCA
TACAGAAGGCGAGGCAGACCTGCAGGATTCTGCCTCAGGCAAGCTTGCTCCCAGTGAAGAAGCTGGTAGT
CACAGTGCTAATAACCTCTTGGCCACTGAAGAAGTGGAAGACTCTCCTAAATCTGAAATTCAAGAAGCTC
TGGAAAAAGGACAGCAGACAAAGGCTGAAGCTGATGGTGTCCTGACTTGCTCTGTTTCACAGTTAACAGT
TTTATCTTCAGTTGAGGAAAGGAGACTAGCTTGGGTAAAAACATTTAAACCCTGGGCTGAAATCTTTGAG
CAAAATCAACATAAGAAAATTGTTAAAAAAAGGAGACTTGTGAAGTGCCCACCAAATACAATGCCTCCTT
TAGATCCATCAGCCATTCTCCAGTATGGCCCTTGGAAATCTTTAAAGCAGGTATTTATAATTTAG

Translation (814 aa):
MEDSDDSEAKLREEIEAELDKISISSLENDEVENDSVSDTQSDSSDTDLLELPESVLHYINVIKNKSKTA
EELILQDVEDTDIFSDYKKGCNHGTVTDSHMHLRTGSLPESKANAEQLMKILSVIEKEEFMRSLAPSARC
VSVREIITPDTPMDEYILPDEADLSFGYFEVEERCRKSFEAWQDKQQELEEKDKETLEAQNEREKRTFQE
EDEKRQCWMRQFEVEKKHLEDLQKQDQDKMNDELHKEEKIWKEKYRQHEEHIRNLHLKMEEERTRLSELQ
EKEKARLFKLRYDAAVKIQATYRASVTYRKYSPIIKEQMEKKRRRAQELKEKEAKIRQKEEEKRRRLEEE
QRVEEEKKKKMLEERRRREREYEEKKSILRQEREEQRSKEVIRLREHAHSPLIITCALKKGDCHGKQQAI
AHVPKGKGTIAKESVDSNSKKQEDACLAQQLNKRENTHVQQLAMKKSTGIKLKPNQAILVELKMNEKNES
LPKLKINENLSKNQCSEQPSDQEFNAENVDQKNELENSNLKESVNEQYPWQGLESDTQTEEHVEHVREEK
VGQETEKLFGFNQEVSAEDSKQAQGVMEETREGLAEEIEIKEMTQQGGPSDENNSSPISMQKSLPSLTPD
NPEPVERSVTLEEDQETDLKSERIEEIPEEGVLSCDAAVINADASVHTEGEADLQDSASGKLAPSEEAGS
HSANNLLATEEVEDSPKSEIQEALEKGQQTKAEADGVLTCSVSQLTVLSSVEERRLAWVKTFKPWAEIFE
QNQHKKIVKKRRLVKCPPNTMPPLDPSAILQYGPWKSLKQVFII


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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