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Report for CCDS27907.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27907.1 Public Mus musculus 16 Mefv 23 108 98 CCDS HistoryNCBI Gene:54483Re-query CCDS DB by CCDS ID:27907.1Re-query CCDS DB by GeneID:54483See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27907.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023180.14 ENSMUSP00000023180.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023180.14Link to Ensembl Protein Viewer:ENSMUSP00000023180.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000023180Re-query CCDS DB by Protein ID:ENSMUSP00000023180
Original member Current member NCBI NM_019453.2 NP_062326.2 Accepted alive Link to Nucleotide Sequence:NM_019453.2Link to Protein Sequence:NP_062326.2Re-query CCDS DB by Nucleotide ID:NM_019453Re-query CCDS DB by Protein ID:NP_062326Link to BLAST:NP_062326.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062326.2 767 Q9JJ26 767 100% 0 0

Chromosomal Locations for CCDS 27907.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 3707975 3708032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3708196 3708227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3708545 3708837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3709013 3709128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3710364 3710386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3710794 3711012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3712964 3713059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3713486 3713829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3715283 3716128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3717786 3718062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2304 nt):
ATGGCCAAGACCCTTGGTGATCATCTGCTAAACACCCTGGAGGAGCTGCTGCCCTATGACTTTGAGAAGT
TCAAGTTTAAGCTACAGAACACCAGCCTGGAGAAGGGCCACTCTAAGATCCCCCGGGGCCATATGCAGAT
GGCCAGGCCAGTAAAGCTGGCCAGCCTTCTGATAACCTACTACGGGGAGGAGTATGCTGTAAGGCTGACC
CTGCAGATCCTGCGGGCCACCAACCAGCGCCAACTAGCAGAGGAGCTTCGCAAAGCCACAGGCACAGAAC
ATTTAATTGAAGAAAATAGAGTTGGTGGTTCTGTCCAGTCTTCTGTAGAGAATAAAGCCAAGAGTGTGAA
GGTACCAGATGTCCCTGAAGGTGATGGGACACAGCAAAACAATGATGAATCAGACACCCTTCCATCCAGC
CAGGCTGAAGTGGGGAAGGGACCCCAGAAGAAGTCACTGACCAAAAGGAAGGATCAGAGGGGCCCCGAGA
GCCTGGACTCACAGACCAAGCCATGGACAAGGAGCACAGCGCCTCTCTATAGGAGAACCCAGGGCACCCA
GTCCCCAGGGGATAAGGAGAGCACAGCAAGTGCCCAGCTCCGCAGGAATGTCAGCTCTGCAGGGAGGCTT
CAAGGACTTTACAACAATGCCCCAGGGAGGAGAGAAAGCAAGAAAGCCGAAGTGTATGTATATTTGCCTT
CAGGAAAGAAGCGACCCAGGAGTCTTGAAATTACCACTTATTCAAGAGAAGGAGAACCCCCAAATTCAGA
AGTTCTTCCAACTCAAGAGGAAACAAGAAATGGGAGTCTCATTCGCATGAGAACAGCTACTCTGAATGGA
AGGACTACGGGGGCTTTAGAAAAGGGCACAGGGATTCCAGAGCATTCCATGGTGCTGGATGAAAAAACAT
TCAGAAACATGTCTTCCAAAACATCGTTGATTGGGGAGGAGAGATGCCCTACATCATGGACGGAAAATGG
AAATGGGAGTCCAGAAACCACAGAGTCCTCGGGAGAGACGGCTGGCAGCATACTCTCTGATCCAGAAGTG
CCTTTGTCACTATGTGAAAAACCAGCTAAAACTCCAGAAGACCCAGCATCCTTAGGACAGGCCGCTTGTG
AAGGAAGGTCACAGGACAAGGCTGTGTGCCCTCTTTGCCACACCCAGGAAGGAGACCTGCGTGGTGATAC
CTGTGTGCAAAGTTCCTGTAGCTGCTCCATTGCTCCTGGGGATCCCAAGGCCTCCGGCAGATGCTCCATA
TGCTTTCAGTGCCAAGGCTTACTTGCCAGAAAGAGCTGCGAAGCCCAGAGCCCCCAGTCCCTACCACAGT
GCCCTCGTCACATGAAGCAGGTGCTGCTGCTTTTCTGTGAGGACCACAGGGAGCCCATCTGCCTCATCTG
CAGGCTGAGCCTGGAGCATCAAGGACATCGAGTGCGCCCCATAGAGGAGGCTGCACTAGAGTACAAGGAG
CAGATCCGGGAGCAGCTGGAGCGCCTGCGGGAGATGAGGGGATATGTGGAGGAGCACAGGCTACAGGGAG
ACAAGAAAACAGACGATTTCCTGAAACAAACAGAAATCCAGAAGCAGAAGATTTCATGTCCACTTGAGAA
GCTATACCAACTCCTGGAGAAGCAAGAACAACTCTTTGTGACCTGGCTACAGGAGCTAAGCCAGACCATC
AGCAAGGTCAGAGAGACATACTACACCCGGGTTTCCCTACTGGATGAGATGATTGAAGAACTAGAGGCCA
AGCAAGACCAGCCAGAGTGGGACCTCATGCAGGACATTGGAATCACCTTGCACAGGGCTAAGATGATGTC
TGCCTCTGAGCTGTTGGACACTCCTCCAGGTGTTAAAGAAAAGCTTCATCTGCTCTACCAGAAGTCAAAG
TCTGTGGAGAAGAATATGCAGTGTTTCTCAGAAATGCTGAGCTCTGAAATGGCATTCAGCGCTTCAGATG
TAGCAAAATGGGAAGGGCGCCAGCCTAGCGCCACACAGGTCCAGGGCTTGGTTCCCACCGTTCACCTAAA
GTGTGATGGTGCACACACACAGGACTGTGATGTAGTATTTTACCCAGAACGGGAAGCTGGAGGATCAGAA
CCTAAAGATTACCTTCATCCTCAGCCAGCTCAAGACACACCTGAGCTACATGAGATCCATTCTCGGAACA
ACAAAAGAAAATTTAAATCTTTCCTGAAATGGAAACCTTCATTCTCCAGAACTGACTGGCGCTTAAGAAC
ATGCTGTTACCGTGATTTGGACCAAGCAGCTGCTCACCCCAACCTCATCTTCTCGATGATATGA

Translation (767 aa):
MAKTLGDHLLNTLEELLPYDFEKFKFKLQNTSLEKGHSKIPRGHMQMARPVKLASLLITYYGEEYAVRLT
LQILRATNQRQLAEELRKATGTEHLIEENRVGGSVQSSVENKAKSVKVPDVPEGDGTQQNNDESDTLPSS
QAEVGKGPQKKSLTKRKDQRGPESLDSQTKPWTRSTAPLYRRTQGTQSPGDKESTASAQLRRNVSSAGRL
QGLYNNAPGRRESKKAEVYVYLPSGKKRPRSLEITTYSREGEPPNSEVLPTQEETRNGSLIRMRTATLNG
RTTGALEKGTGIPEHSMVLDEKTFRNMSSKTSLIGEERCPTSWTENGNGSPETTESSGETAGSILSDPEV
PLSLCEKPAKTPEDPASLGQAACEGRSQDKAVCPLCHTQEGDLRGDTCVQSSCSCSIAPGDPKASGRCSI
CFQCQGLLARKSCEAQSPQSLPQCPRHMKQVLLLFCEDHREPICLICRLSLEHQGHRVRPIEEAALEYKE
QIREQLERLREMRGYVEEHRLQGDKKTDDFLKQTEIQKQKISCPLEKLYQLLEKQEQLFVTWLQELSQTI
SKVRETYYTRVSLLDEMIEELEAKQDQPEWDLMQDIGITLHRAKMMSASELLDTPPGVKEKLHLLYQKSK
SVEKNMQCFSEMLSSEMAFSASDVAKWEGRQPSATQVQGLVPTVHLKCDGAHTQDCDVVFYPEREAGGSE
PKDYLHPQPAQDTPELHEIHSRNNKRKFKSFLKWKPSFSRTDWRLRTCCYRDLDQAAAHPNLIFSMI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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