NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS27565.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27565.1 Public Mus musculus 15 Oplah 23 108 98 CCDS HistoryNCBI Gene:75475Re-query CCDS DB by CCDS ID:27565.1Re-query CCDS DB by GeneID:75475See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27565.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023222.12 ENSMUSP00000023222.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023222.12Link to Ensembl Protein Viewer:ENSMUSP00000023222.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000023222Re-query CCDS DB by Protein ID:ENSMUSP00000023222
Original member Current member EBI ENSMUST00000171340.8 ENSMUSP00000129100.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171340.8Link to Ensembl Protein Viewer:ENSMUSP00000129100.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000171340Re-query CCDS DB by Protein ID:ENSMUSP00000129100
Original member Current member NCBI NM_153122.3 NP_694762.1 Accepted alive Link to Nucleotide Sequence:NM_153122.3Link to Protein Sequence:NP_694762.1Re-query CCDS DB by Nucleotide ID:NM_153122Re-query CCDS DB by Protein ID:NP_694762Link to BLAST:NP_694762.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_694762.1 1288 Q8K010 1288 100% 0 0

Chromosomal Locations for CCDS 27565.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 76296635 76296781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76296921 76297018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76297117 76297277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76297359 76297516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76297619 76297768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76297906 76298040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76298136 76298282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76298387 76298571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76300826 76301000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76301093 76301194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76301287 76301447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76302046 76302197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76302382 76302494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76302631 76302769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76302856 76302993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76303178 76303348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76303436 76303548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76304087 76304352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76304466 76304533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76304634 76304772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76304893 76305058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76305140 76305335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76305448 76305571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76305661 76305760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76306199 76306390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76306475 76306645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3867 nt):
ATGGGCAGCCCAGAAGAGCGCTTCCATTTTGCCATCGACCGTGGTGGCACCTTTACAGATGTCTTTGCCC
AGTGCCCAGGAGGGCATGTACGTGTCCTGAAGCTGCTCTCAGAGGATCCTGCCAACTATGCAGACGCACC
CACAGAGGGCATCCGCCGAATTCTAGAGCAGGAGAGGGGTGTGCTGCTGCCCCGAGGCCGGCCGCTAGAC
ACCAGTCACATCGCCAGCATCCGCATGGGTACCACCGTGGCCACCAATGCTCTGTTGGAACGGCAGGGAG
AACGGGTGGCACTGCTGGTGACTCGCGGTTTCCGAGACCTGCTGCATATTGGCACTCAGGCCCGCCCAGA
CCTCTTTGACCTGGCTGTGCCCATGCCAGAGGTACTGTATGAGGAGGTCGTGGAGGTGGACGAGCGAGTG
CTGCTGTATCGTGGAGAACCCGGTGCCGGCTCTCCCGTCAAAGGCTGTACAGGGGACCTGCTAGAGATAC
AGCAGCCTGTGGATCTGGCAGCCCTGCGTGGGAAGCTGGAGGGGCTCTTGACTCGGGGCATTCACAGCCT
GGCAGTGGTACTCATGCATTCGTACACGTGGGCCCAGCACGAGCAGCAGGTGGGCACACTGGCCCGGGAG
CTGGGCTTCACGCACGTCTCCTTGTCCTCGGAAGTCATGCCCATGGTGCGGATTGTTCCTCGGGGGCATA
CGGCCTGTGCAGATGCTTACCTCACTCCCACCATCCAGCGCTATGTGCAGGGCTTCCGCCGAGGCTTCCA
GGGCCAGCTAAAGAATGTGCAAGTCCTCTTCATGCGCTCCGATGGTGGCCTGGCACCCATGGATGCCTTC
AGTGGCTCCCGGGCTGTGCTCTCTGGCCCTGCTGGTGGTGTGGTTGGCTACTCCACTACCACCTACCAGC
TGGAAGGTGGTCAGCCTGTCATTGGCTTTGACATGGGAGGCACATCCACAGATGTGAGCCGCTATGCTGG
AGAGTTTGAGCACGTCTTTGAGGCTAGCACGGCAGGTGTTACCCTCCAGGCCCCACAGCTGGACATCAAT
ACGGTGGCAGCTGGCGGGGGTTCCCGCCTCTTCTTCAGGTCTGGCCTCTTTGTGGTTGGTCCAGAGTCAG
CAGGTGCCCACCCAGGTCCTGCCTGCTACCGCAAAGGGGGTCCTGTGACAGTGACAGATGCTAATCTGGT
TCTGGGTCGCCTGCTGCCTGCCTCCTTCCCCTGCATTTTTGGGCCAGGAGAAGACCAGCCATTGTCTCCC
GAGGCTTCCCGAAAGGCTCTAGAGGCTGTGGCCATGGAGGTCAACAGTTTCTTGGCCAGTGGACCCTGCC
CAGCTTCCCAGCTAAGTCTGGAGGAGGTGGCCATGGGGTTTGTGCGTGTTGCCAACGAAGCCATGTGCCG
GCCTATCCGTGCCCTCACACAGGCACGAGGCCACGACCCCTCAGCCCATGTACTGGCTTGCTTTGGAGGA
GCCGGTGGGCAACACGCTTGTGCCATTGCCCGGGCCCTGGGTATGGACACTGTGCATATTCACAGGCACA
GCGGGCTGCTGTCAGCACTGGGACTGGCCTTGGCCGATGTGGTTCACGAAGCACAGGAGCCCTGTTCCCT
GTCTTACACACCTGAAACCTTTGCACAACTGGACCAGAGACTGAGCCGCCTGGAGGAGCAGTGTGTGGAT
GCCCTGCAGGCCCAGGGCTTCTCTAGGTCTCAGATCAGCACCGAGAGCTTCCTGCACCTTCGCTACCAAG
GCACTGACTGTGCCCTAATGGTGTCTGCCAATCAGCATCCGGCCACAACCTGCTCACCCCGTGCTGGTGA
CTTTGGAGCAGCGTTTGTCGAGAGGTACATGAGAGAGTTTGGCTTCATCATTCCTGAGCGCTCGGTGGTG
GTAGATGATGTGCGTGTGAGGGGAACTGGCCGTAGTGGACTTCAGCTGGAGGAGACCTCCAAAATCCAGA
GTGGACCTCCGCATGTGGAAAAGGTGACCCAGTGCTACTTTGAAGGGGGTTATCAGGAGACTCCCGTGTA
CCTTTTAGGAGAACTAGGCTACGGGCATCAGCTTCAAGGGCCCTGCCTGATCATTGACAACAACAGCACC
ATCCTTGTAGAACCAGGTTGCCAAGCGGAGGTGATTGAGACAGGGGACATCCGCATTTCTGTGGGAGCCG
AGGCTCCCAGTATGATAGACACCAAGCTTGACCCCATCCAGTTGTCTATTTTCTCACACCGTTTCATGAG
CATTGCTGAGCAGATGGGCCGCATCCTACAGCGCACAGCCATCTCTACCAACATCAAGGAACGCCTCGAC
TTCTCCTGTGCCCTCTTTGGGCCAGATGGGGGCCTCGTCTCCAATGCTCCCCACATTCCTGTGCACCTGG
GTGCCATGCAAGAGACTGTACAGTTCCAGATTCAGCACTTAGGAGCCGACCTCCATCCTGGTGATGTGTT
GCTTAGTAACCATCCCAGTGCAGGGGGCAGCCATCTTCCTGACCTGACTGTCATCACACCGGTGTTTTGG
CCAGGTCAGTCGAGGCCTGTGTTCTACGTGGCTAGCCGAGGGCACCACGCGGACATTGGAGGTATCACCC
CGGGTTCTATGCCTCCTCACTCTACCACACTGCAGCAGGAGGGTGCCGTTTTTCTGTCCTTCAAACTGGT
CCAGGGAGGAGTCTTCCAGGAAGAGGCGGTGACAGAGGCCTTACAGGCCCCAGGCAAGATCTCTGGCTGC
AGTGGGACCAGGAACCTGCATGACAACCTGTCGGATCTCCGTGCCCAGGTGGCAGCTAACCAGAAAGGCA
TCCAGCTGGTGGGAGAGCTGATCGGACAGTATGGCTTAGATGTGGTGCAGGCCTATATGGGCCATATTCA
GGCAAATGCTGAACTAGCAGTGCGAGACATGCTTCGTGCTTTTGGAACTTCCCGCCAGGCCAGGGGCCTG
CCCCTGGAGGTGTCTGCCAAGGATCACATGGACGATGGCTCTCCCATCTGCCTGCATGTTCAGATCAACC
TGAATCAGGGCAGCGCTGTATTTGACTTCAGTGGTTCTGGGTCTGAGGTGTTTGGCAATCTCAATGCCCC
TCGAGCCATAACACTGTCTGCTCTCATCTATTGCTTGCGCTGTCTAGTGGGCCGTGACATCCCACTTAAC
CAGGGTTGCCTGGCTCCTGTGCAAGTCATAATTCCCAAAGGCTCCATATTGGATCCATCCCCAGAGGCAG
CAGTGGTCGGAGGCAACGTGCTCACATCTCAGCGAGTCGTGGATGTCATCCTGGGGGCTTTTGGGGCCTG
TGCAGCCTCCCAGGGCTGCATGAACAATGTGACCCTGGGCAATGCCCGTATGGGCTACTATGAGACAGTA
GCTGGTGGTGCGGGTGCAGGCCCTGGCTGGCATGGGCGCAGTGGTGTACACAGTCACATGACCAACACGC
GCATTACGGACCCAGAGATTTTGGAGAGCCGGTATCCAGTTATCCTGCGCCGCTTTGAGCTGAGGCCAGG
CTCTGGAGGCCGAGGCCGCTTCCGGGGAGGTGATGGCGTAGTCCGAGAGCTGGTCTTTCGGGAAGAGGCG
CTACTGTCTGTCCTCACGGAGCGCCGCGCCTTCCAGCCTTATGGCCTCCACGGGGGAGAGCCTGGTACAC
GTGGCTTAAACCTCCTGATCAGAAAAGATGGGCGCACAGTGAATCTGGGCGGCAAGACATCCGTGACTGT
GTATCCCGGGGACGCGTTCTGCCTCCACACGCCTGGGGGTGGGGGCTATGGAGACCCGGAGGACCCAGCA
CCACCACCAGGCTCGCCCCCGCTATATCCAGCCTTCCCAGAGCGAGGCAGTGTGTATGAGTACCGCCGCG
CCCAGGAAGCAGTATGA

Translation (1288 aa):
MGSPEERFHFAIDRGGTFTDVFAQCPGGHVRVLKLLSEDPANYADAPTEGIRRILEQERGVLLPRGRPLD
TSHIASIRMGTTVATNALLERQGERVALLVTRGFRDLLHIGTQARPDLFDLAVPMPEVLYEEVVEVDERV
LLYRGEPGAGSPVKGCTGDLLEIQQPVDLAALRGKLEGLLTRGIHSLAVVLMHSYTWAQHEQQVGTLARE
LGFTHVSLSSEVMPMVRIVPRGHTACADAYLTPTIQRYVQGFRRGFQGQLKNVQVLFMRSDGGLAPMDAF
SGSRAVLSGPAGGVVGYSTTTYQLEGGQPVIGFDMGGTSTDVSRYAGEFEHVFEASTAGVTLQAPQLDIN
TVAAGGGSRLFFRSGLFVVGPESAGAHPGPACYRKGGPVTVTDANLVLGRLLPASFPCIFGPGEDQPLSP
EASRKALEAVAMEVNSFLASGPCPASQLSLEEVAMGFVRVANEAMCRPIRALTQARGHDPSAHVLACFGG
AGGQHACAIARALGMDTVHIHRHSGLLSALGLALADVVHEAQEPCSLSYTPETFAQLDQRLSRLEEQCVD
ALQAQGFSRSQISTESFLHLRYQGTDCALMVSANQHPATTCSPRAGDFGAAFVERYMREFGFIIPERSVV
VDDVRVRGTGRSGLQLEETSKIQSGPPHVEKVTQCYFEGGYQETPVYLLGELGYGHQLQGPCLIIDNNST
ILVEPGCQAEVIETGDIRISVGAEAPSMIDTKLDPIQLSIFSHRFMSIAEQMGRILQRTAISTNIKERLD
FSCALFGPDGGLVSNAPHIPVHLGAMQETVQFQIQHLGADLHPGDVLLSNHPSAGGSHLPDLTVITPVFW
PGQSRPVFYVASRGHHADIGGITPGSMPPHSTTLQQEGAVFLSFKLVQGGVFQEEAVTEALQAPGKISGC
SGTRNLHDNLSDLRAQVAANQKGIQLVGELIGQYGLDVVQAYMGHIQANAELAVRDMLRAFGTSRQARGL
PLEVSAKDHMDDGSPICLHVQINLNQGSAVFDFSGSGSEVFGNLNAPRAITLSALIYCLRCLVGRDIPLN
QGCLAPVQVIIPKGSILDPSPEAAVVGGNVLTSQRVVDVILGAFGACAASQGCMNNVTLGNARMGYYETV
AGGAGAGPGWHGRSGVHSHMTNTRITDPEILESRYPVILRRFELRPGSGGRGRFRGGDGVVRELVFREEA
LLSVLTERRAFQPYGLHGGEPGTRGLNLLIRKDGRTVNLGGKTSVTVYPGDAFCLHTPGGGGYGDPEDPA
PPPGSPPLYPAFPERGSVYEYRRAQEAV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH