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Report for CCDS28933.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28933.1 Public Mus musculus 17 Nudt12 23 108 98 CCDS HistoryNCBI Gene:67993Re-query CCDS DB by CCDS ID:28933.1Re-query CCDS DB by GeneID:67993See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28933.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025065.11 ENSMUSP00000025065.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025065.11Link to Ensembl Protein Viewer:ENSMUSP00000025065.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000025065Re-query CCDS DB by Protein ID:ENSMUSP00000025065
Original member Current member NCBI NM_026497.3 NP_080773.1 Accepted alive Link to Nucleotide Sequence:NM_026497.3Link to Protein Sequence:NP_080773.1Re-query CCDS DB by Nucleotide ID:NM_026497Re-query CCDS DB by Protein ID:NP_080773Link to BLAST:NP_080773.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080773.1 462 Q9DCN1-1 462 100% 0 0

Chromosomal Locations for CCDS 28933.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 59002181 59002291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 59003329 59003528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 59006504 59006617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 59007624 59007791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 59009855 59010444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 59011043 59011248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1389 nt):
ATGTCTTCTGTTAAAAGAAATCCCAAAAAGGAGATGATTTCTGAACTCCACAGTTCAGCCGCAGAGGGAA
ATGTCGCAAAGTTAGCAGGAATACTCAGCCATTCTCCATCTCTTCTCAATGAGACTTCTGAAAATGGATG
GACTGCTTTAATGTACGCCGCCAGGAACGGGCATCCCGATGTGGTCCAGTTTCTGCTTGAGAAAGGATGT
GACAGATCACTTGTCAATAAAGCGAGGCAAACCGCCCTGGATATTGCTGCATTTTGGGGTTATAGGCATA
TAGCTAACTTGTTAGCAAATGCAAAAGGTGGGAAGAAGCCCTGGTTCCTAACCAATGAAGTAGACGAGTG
TGAGAATTATTTTAGCAGAACACTACTGGACCGGAGGAGTGACAAAAGAAATAATTCTGACTGGCTGCAA
GCTAAAGAGAGCCACCCCACCACAGTTTATCTCCTTTTCTCAGACTTGAACCCCCTGGTTACCCTAGGTG
GTAATAAAGAAAGCTCGCAGCAGCCGGAAGTCCGGCTTTGCCAGCTGAACTACCCGGATGTAAAGGGTTA
CTTGGCTCAGCCTGAGAAGATCACCTTGGTGTTCCTTGGAGTCGAGCTTGAGATGAGGAAAGGCTCACCC
GCCCAGGCGGGAGGAGTCCCAGAGGAAGAGGAGGACGGTTTGGTTGCTTGGTTTGCCCTCGGTATTGAAC
CCGGTGCTGCTGAGGAGTTTAAGCAAAGACATGAAAATTGTTATTTTCTCCACCCGCCAATGCCAGCTCT
TCTGCAGTTGAAAGAAAAGGAGGCTGGGGTGGTAGCTCAAGCAAGATCAGTGCTTGCCTGGCATAGTCGA
TACAAGTTCTGCCCAACCTGTGGCAGTGCGACTAAAATTGAGGAAGGAGGCTACAAAAGAGTGTGTGTAC
GAGAGACTTGCCCTAGTCTCCAAGGCGTCCACAACACATCTTACCCGAGAGTTGATCCAGTCGTAATTAT
GCAGGTCATCCATCCAGATGGAACCAAATGTCTTCTAGGCAGGCAAAAGCGATTCCCCCCGGGCATGTTC
ACATGTCTTGCTGGATTTATAGAGCCCGGGGAGACAATAGAAGATGCTGTGCGGAGAGAGGTGGAAGAGG
AAAGTGGAGTCAAAGTTGGCCATGTTCAGTATGTCTCTTGTCAACCATGGCCAATGCCCTCCTCGTTAAT
GATTGGCTGTTTAGCTGTGGCAGTGTCTACAGAAATTAAAGTTGACAAGAATGAAATAGAGGATGCCCGA
TGGTTCACTAGAGAACAGGTTGTGGACGTTCTTACCAAAGGGAAGCAGCAAGCATTCTTTGTGCCACCAA
GCCGAGCTATCGCACATCAGTTAATCAAACACTGGGTGGGAATGAACCCCAATCTCTAA

Translation (462 aa):
MSSVKRNPKKEMISELHSSAAEGNVAKLAGILSHSPSLLNETSENGWTALMYAARNGHPDVVQFLLEKGC
DRSLVNKARQTALDIAAFWGYRHIANLLANAKGGKKPWFLTNEVDECENYFSRTLLDRRSDKRNNSDWLQ
AKESHPTTVYLLFSDLNPLVTLGGNKESSQQPEVRLCQLNYPDVKGYLAQPEKITLVFLGVELEMRKGSP
AQAGGVPEEEEDGLVAWFALGIEPGAAEEFKQRHENCYFLHPPMPALLQLKEKEAGVVAQARSVLAWHSR
YKFCPTCGSATKIEEGGYKRVCVRETCPSLQGVHNTSYPRVDPVVIMQVIHPDGTKCLLGRQKRFPPGMF
TCLAGFIEPGETIEDAVRREVEEESGVKVGHVQYVSCQPWPMPSSLMIGCLAVAVSTEIKVDKNEIEDAR
WFTREQVVDVLTKGKQQAFFVPPSRAIAHQLIKHWVGMNPNL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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