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Report for CCDS18166.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18166.1 Public Mus musculus 4 Invs 23 108 98 CCDS HistoryNCBI Gene:16348Re-query CCDS DB by CCDS ID:18166.1Re-query CCDS DB by GeneID:16348See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18166.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030029.9 ENSMUSP00000030029.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030029.9Link to Ensembl Protein Viewer:ENSMUSP00000030029.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000030029Re-query CCDS DB by Protein ID:ENSMUSP00000030029
Original member NCBI NM_010569.4 NP_034699.3 Updated not alive Link to Nucleotide Sequence:NM_010569.4Link to Protein Sequence:NP_034699.3Re-query CCDS DB by Nucleotide ID:NM_010569Re-query CCDS DB by Protein ID:NP_034699
Current member NCBI NM_010569.5 NP_034699.3 Accepted alive Link to Nucleotide Sequence:NM_010569.5Link to Protein Sequence:NP_034699.3Re-query CCDS DB by Nucleotide ID:NM_010569Re-query CCDS DB by Protein ID:NP_034699Link to BLAST:NP_034699.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034699.3 1062 O89019-1 1062 99.8117% 0 2

Chromosomal Locations for CCDS 18166.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 48283250 48283355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 48307683 48307849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 48382105 48382278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 48385105 48385272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 48389959 48390139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 48392584 48392693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 48396235 48396406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 48397505 48397660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 48398050 48398279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 48402833 48402939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 48407598 48407810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 48415906 48416198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 48421447 48422149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 48425995 48426224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 48427034 48427108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 48429605 48429708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3189 nt):
ATGAACATATCCGAGGATGTACTCTCTACGGGGTCCTCATTAGCATCTCAGGTTCATGCCGCTGCAGTTA
ATGGAGATAAAGGTGCCCTTCAGAGACTCATTGTTGGAAACTCTGCTCTCAGAGACAAAGAAGACCGGTT
TGGGAGAACACCACTTATGTACTGTGTGTTGGCAGACAGAGTGGACTGTGCAGATGCTCTTCTCAAAGCA
GGAGCAGATGTCAACAAAACGGACCATAGCCGGAGAACAGCCCTCCACCTTGCAGCTCAAAAGGGAAATT
ATCGCTTTATGAAACTCTTACTTACTCGAAGAGCAAACTGGATGCAGAAGGATCTAGAAGAGATGACACC
TTTGCACCTGAGCACTCGGCACAGGAGCCCCAAGTGTCTAGCTCTTCTGCTGAAGTTTATGGCCCCTGGG
GAGGTGGATACACAGGACAAAAACAAGCAAACAGCTCTGCACTGGAGTGCCTACTACAACAACCCCGAGC
ACGCGAAGCTACTCATCAAGCACGACTCCAACATCGGGATTCCCGACGTGGAAGGCAAGATCCCACTCCA
CTGGGCAGCCAACCACAAAGACCCGAGTGCCGTGCACACAGTGAGATGTATCCTGGACGCTGCCCCGACA
GAGTCTTTACTGAACTGGCAAGACTACGAGGGCCGCACACCTCTGCACTTTGCTGTCGCTGATGGAAACC
TAACGGTGGTGGATGTCTTGACCTCCTATGAAAGCTGCAACATAACGTCTTACGATAACTTATTTCGAAC
CCCACTTCACTGGGCAGCCTTACTAGGTCATGCACAGATTGTCCATCTCCTTCTAGAAAGAAACAAGTCT
GGAACGATCCCTTCGGACAGCCAGGGAGCAACACCCTTGCACTATGCAGCTCAGAGTAACTTTGCTGAAA
CGGTCAAAGTGTTTTTGCAGCATCCTTCAGTGAAGGATGATTCTGACCTGGAAGGAAGAACATCTTTCAT
GTGGGCAGCAGGAAAAGGCAATGACGACGTGCTCAGGACGATGCTGAGTCTAAAGTCAGACATCGACATT
AACATGTCGGACAAGTACGGAGGCACAGCTTTACACGCCGCTGCCCTTTCTGGCCACGTCAGCACCGTGA
AGTTATTATTGGACAATGATGCTCAAGTGGATGCCACTGACGTCATGAAACATACTCCACTGTTCCGAGC
CTGTGAGATGGGACACAGAGATGTGATTCAGACGCTTATTAAAGGTGGAGCACGAGTAGATCTGGTTGAC
CAGGACGGACATTCGCTTCTACACTGGGCAGCGCTGGGGGGAAATGCTGACGTCTGCCAGATACTGATAG
AAAATAAGATCAACCCAAACGTGCAGGATTATGCAGGAAGAACACCGCTTCAGTGTGCTGCGTACGGAGG
GTACATCAACTGTATGGCTGTGCTCATGGAGAATAATGCAGACCCCAACATCCAAGACAAAGAGGGACGA
ACAGCTTTGCACTGGTCCTGTAACAATGGCTACCTTGATGCCATTAAACTACTGCTAGATTTTGCTGCTT
TCCCTAATCAGATGGAGAACAATGAGGAGAGGTACACACCCCTTGATTATGCATTGCTTGGTGAGCGCCA
TGAGGTGATCCAGTTCATGCTGGAACATGGTGCCCTGTCCATCGCAGCTATACAAGACATCGCTGCCTTC
AAAATCCAAGCAGTCTACAAAGGATACAAGGTCAGAAAAGCCTTCCGAGACCGGAAGAACCTCCTCATGA
AGCACGAACAGCTGAGGAAAGACGCTGCAGCCAAAAAACGGGAAGAGGAAAACAAGAGGAAGGAAGCTGA
ACAGCAGAAAGGGCAGCTGGACACCGATCCTCCCAGATCCCACTGCAGTTCATCTGCACCTGTCCTCCCC
TGTCCACCCAGCCCCCAGAATGAGGCCAGCAAGCAGGACGCAACCCCTAGCAAACAGCCACCTGCTAGCC
ACACAGTCCAGAGCCCTGACCCAGAACACAGCAGGCCTCCAGGCAGATGTCCAGGCAGAGCCTCCCAAGG
GGATTCTTCCATAGACCTTCAGGGAACGGCCTCCAGAAAGCCAAGTGAAACACCCATAGAGCACTGCAGA
GGCCCCTCTGCCTGTGTGCACCCCAGATCCTGGGAAGGTGGCAACAGCTCCAAGAACCAGGGAACATCCT
CTGTGGAGAAGCGCAGAGGTGAGACCAATGGCAAACACCGGAGGTGTGAGGAGGGGCCCAGCAGCGCCAG
GCAGCCCTTGTGCACTGGGTCAGGCCGGCCTGCTGAGAAAGGAGAGGACTCCAGCCCTGCAGTTGCAAGT
GCTTCCCAGCAGGACCACCCCAGGAAGCCCAATAAGAGACAGGACAGGGCAGCCAGGCCCAGAGGTGCTT
CGCAGAAAAGACGCACCCATCAGCTCAGAGACAGGTGCTCCCCAGCTGGGTCCAGCCGGCCTGGCAGTGC
CAAGGGGGAAGTTGCCTGTGCTGATCAGAGTTCTCTCCACCGTCACACACCAAGAAGCAAGGTGACCCAG
GACAAGCTTATAGGAGGGGTCTCCTCAGGTTTGCCGCTCAGCACAGAAGCGTCGAGGTCAGGATGCAAGC
AGCTTTATGAGGACATCTGTGCATCTCCAGAGACTGGCGTGGCTCATGGCCCCCCACCTGGACAGTGTAT
GAATATTCACCTTCTTCCTGTAGAGCAGCGCCTGCTGATAATCCAGAGGGAACGAAGCAGGAAAGAGCTG
TTTCGACGGAAAAACAAGGCAGCGGCGGTCATCCAGCGAGCTTGGCGAAGCTACCAGCTCAGGAAGCACC
TGTCTCGGCTTCTGCATTTGAAGCAGCTTGGAGCCAGAGAAGTGCTCAGATGTACCCAAGTGTGCACAGC
CCTGCTCCTCCAGGTTTGGAGGAAAGAACTGGAACTCAAATTCCCAAAGTCCATCTCAGTAAGCAGGACA
TCGAAGAGTCCATCCAAAGGCTCGTCGGCCACAAAGTATGCCAGGCACTCAGTGCTCAGGCAGATCTACG
GTTGTTCTCAAGAAGGGAAAGGACATCATCCCATCAAATCTTCTAAAGCCCCCGCTGTGCTTCATCTCAG
CTCAGTGAACAGTTTGCAGTCTATACATCTTGACAACAGTGGAAGATCAAAGAAGTTCTCTTACAATCTG
CAACCATCCAGTCAATCAAAAAACAAGCCAAAGCTTTAA

Translation (1062 aa):
MNISEDVLSTGSSLASQVHAAAVNGDKGALQRLIVGNSALRDKEDRFGRTPLMYCVLADRVDCADALLKA
GADVNKTDHSRRTALHLAAQKGNYRFMKLLLTRRANWMQKDLEEMTPLHLSTRHRSPKCLALLLKFMAPG
EVDTQDKNKQTALHWSAYYNNPEHAKLLIKHDSNIGIPDVEGKIPLHWAANHKDPSAVHTVRCILDAAPT
ESLLNWQDYEGRTPLHFAVADGNLTVVDVLTSYESCNITSYDNLFRTPLHWAALLGHAQIVHLLLERNKS
GTIPSDSQGATPLHYAAQSNFAETVKVFLQHPSVKDDSDLEGRTSFMWAAGKGNDDVLRTMLSLKSDIDI
NMSDKYGGTALHAAALSGHVSTVKLLLDNDAQVDATDVMKHTPLFRACEMGHRDVIQTLIKGGARVDLVD
QDGHSLLHWAALGGNADVCQILIENKINPNVQDYAGRTPLQCAAYGGYINCMAVLMENNADPNIQDKEGR
TALHWSCNNGYLDAIKLLLDFAAFPNQMENNEERYTPLDYALLGERHEVIQFMLEHGALSIAAIQDIAAF
KIQAVYKGYKVRKAFRDRKNLLMKHEQLRKDAAAKKREEENKRKEAEQQKGQLDTDPPRSHCSSSAPVLP
CPPSPQNEASKQDATPSKQPPASHTVQSPDPEHSRPPGRCPGRASQGDSSIDLQGTASRKPSETPIEHCR
GPSACVHPRSWEGGNSSKNQGTSSVEKRRGETNGKHRRCEEGPSSARQPLCTGSGRPAEKGEDSSPAVAS
ASQQDHPRKPNKRQDRAARPRGASQKRRTHQLRDRCSPAGSSRPGSAKGEVACADQSSLHRHTPRSKVTQ
DKLIGGVSSGLPLSTEASRSGCKQLYEDICASPETGVAHGPPPGQCMNIHLLPVEQRLLIIQRERSRKEL
FRRKNKAAAVIQRAWRSYQLRKHLSRLLHLKQLGAREVLRCTQVCTALLLQVWRKELELKFPKSISVSRT
SKSPSKGSSATKYARHSVLRQIYGCSQEGKGHHPIKSSKAPAVLHLSSVNSLQSIHLDNSGRSKKFSYNL
QPSSQSKNKPKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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