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Report for CCDS20647.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20647.1 Public Mus musculus 6 Emp1 23 108 98 CCDS HistoryNCBI Gene:13730Re-query CCDS DB by CCDS ID:20647.1Re-query CCDS DB by GeneID:13730See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20647.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032330.15 ENSMUSP00000032330.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032330.15Link to Ensembl Protein Viewer:ENSMUSP00000032330.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000032330Re-query CCDS DB by Protein ID:ENSMUSP00000032330
Original member Current member EBI ENSMUST00000111907.1 ENSMUSP00000107538.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111907.1Link to Ensembl Protein Viewer:ENSMUSP00000107538.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111907Re-query CCDS DB by Protein ID:ENSMUSP00000107538
Original member Current member EBI ENSMUST00000205156.2 ENSMUSP00000145069.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000205156.2Link to Ensembl Protein Viewer:ENSMUSP00000145069.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000205156Re-query CCDS DB by Protein ID:ENSMUSP00000145069
Original member Current member NCBI NM_001288627.1 NP_001275556.1 Accepted alive Link to Nucleotide Sequence:NM_001288627.1Link to Protein Sequence:NP_001275556.1Re-query CCDS DB by Nucleotide ID:NM_001288627Re-query CCDS DB by Protein ID:NP_001275556Link to BLAST:NP_001275556.1
Original member Current member NCBI NM_010128.4 NP_034258.1 Accepted alive Link to Nucleotide Sequence:NM_010128.4Link to Protein Sequence:NP_034258.1Re-query CCDS DB by Nucleotide ID:NM_010128Re-query CCDS DB by Protein ID:NP_034258Link to BLAST:NP_034258.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001275556.1 160 P47801 160 100% 0 0
NP_034258.1 160 P47801 160 100% 0 0

Chromosomal Locations for CCDS 20647.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 135377211 135377288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 135379901 135379997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 135380101 135380241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 135380974 135381140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (483 nt):
ATGTTGGTGCTACTGGCTGGTCTCTTTGTGGTCCACATTGCCACTGCCATTATGCTGTTTGTCTCCACCA
TTGCCAACGTCTGGATGGTTGCAGATTACGCAAATGCATCTGTAGGGCTTTGGAAGAACTGCACTGGTGG
TAACTGCGACGGCTCCCTGTCCTACGGCAATGAAGATGCTATCAAGGCAGTGCAAGCCTTCATGATCCTC
TCCATCATCTTCTCCATCATCTCCCTTGTGGTCTTCGTGTTCCAGCTCTTCACTATGGAGAAGGGAAACC
GGTTCTTCCTCTCAGGGTCCACCATGCTGGTGTGCTGGCTGTGTATCCTGGTTGGAGTGTCAATCTACAC
TCATCATTACGCCCACAGCGAAGGGAACTTCAACTCCAGCAGCCACCAAGGCTATTGTTTCATCCTGACC
TGGATCTGCTTCTGTTTCAGCTTCATCATCGGCATACTCTATATGGTCCTGAGGAAGAAATAA

Translation (160 aa):
MLVLLAGLFVVHIATAIMLFVSTIANVWMVADYANASVGLWKNCTGGNCDGSLSYGNEDAIKAVQAFMIL
SIIFSIISLVVFVFQLFTMEKGNRFFLSGSTMLVCWLCILVGVSIYTHHYAHSEGNFNSSSHQGYCFILT
WICFCFSFIIGILYMVLRKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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