NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS40309.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40309.1 Reviewed, update pending Mus musculus 8 Hgsnat 23 108 98 CCDS HistoryNCBI Gene:52120Re-query CCDS DB by CCDS ID:40309.1Re-query CCDS DB by GeneID:52120See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 40309.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037609.7 ENSMUSP00000040356.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037609.7Link to Ensembl Protein Viewer:ENSMUSP00000040356.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000037609Re-query CCDS DB by Protein ID:ENSMUSP00000040356
Original member NCBI NM_029884.1 NP_084160.1 Updated not alive Link to Nucleotide Sequence:NM_029884.1Link to Protein Sequence:NP_084160.1Re-query CCDS DB by Nucleotide ID:NM_029884Re-query CCDS DB by Protein ID:NP_084160
Current member NCBI NM_029884.2 NP_084160.2 Pending alive Link to Nucleotide Sequence:NM_029884.2Link to Protein Sequence:NP_084160.2Re-query CCDS DB by Nucleotide ID:NM_029884Re-query CCDS DB by Protein ID:NP_084160Link to BLAST:NP_084160.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084160.2 624 Q3UDW8-2 624 100% 0 0

Chromosomal Locations for CCDS 40309.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 25945134 25945315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25946236 25946348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25946447 25946517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25947934 25948011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25951969 25952055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25953281 25953407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25954606 25954727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25955674 25955789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25957190 25957350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25959583 25959613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25960826 25960902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25963355 25963458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25964794 25964863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25968363 25968432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25971047 25971168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25971566 25971702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25972842 25972957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25976525 25976711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1971 nt):
ATGACGGGCGGGTCGAGCTCGCGCAGGCGCCGGGCAGAAGAGCGCAGCTCGGCTGCGGGGACAGAGCGCA
ACTCCCGGAGAGAGGCTGTGGGAGGCATGGGCGCGGGCCCGGCGCTGGCAGCGCTGCTGCTGGCCGGGTC
GGTGCTGAGCGCCACGCTGCTGGCCCCCGGCCGCCGGGCGGAGCCAGATTTAGATGAAAAAAGGAACGTG
GAGCTGAAGATGGATCAGGCTTTGCTGCTTATTCACAATGAACTCTTGGGGACGAGCCTGACTGTGTACT
GGAAATCTGATGACTGTTACCAATGCACCTTCCAGCCACTGGCGAACGTCTCTCACGGTGGAAAGCCAGC
AAAGCCAAGCGTGGCACCTGTCTCTGTGAGCACCCAGCATGGGTCCATCCTGCAGGTTAACTCCACCTCG
GAGGAGAGAGCAGCTTGCAGGCTGGAATACAAATTTGGAGAATTTGGAAACTATTCCCTTTTGGTGCAGC
ATGCTTCCAGCGGGGCCAATAAAATTGCCTGTGACATCATCGTCAATGAGAATCCAGTGGACAGTAACCT
TCCTGTGAGCATCGCATTCCTTGTTGGTTTAGCCCTCATCGTCGCAGTATCCCTCCTGAGGCTCTTGCTG
AGTTTGGATGATGTCAATAACTGGATATCTAAGACAATAGCTTCTCGAGAAACTGACCGTCTCATCAATT
CTGAGCTAGGGTCTCCCAGCAGAGCAGACCCTCTCAGCGCTGATTACCAACCAGAAACTCGGCGTTCTTC
TGCGAACCGTCTCCGATGTGTGGACACATTTAGGGGGTTAGCTCTCGTCCTCATGGTCTTTGTTAACTAT
GGAGGAGGAAAGTATTGGTACTTCAAACATTCAAGTTGGAACGGACTGACTGTGGCCGACCTCGTCTTCC
CATGGTTTGTATTTATTATGGGAACTTCAATTTTCCTATCAATGACTTCTATCCTGCAACGAGGATGTTC
AAAACTCAAACTGCTGGGGAAGATTGTGTGGAGAAGCTTCCTGCTAATCTGTATAGGAGTTATCATTGTC
AACCCCAATTATTGCCTTGGTCCATTGTCTTGGGATAAAGTGCGGATCCCTGGTGTCCTGCAGCGGTTGG
GAGTGACATACTTCGTGGTCGCTGTGTTGGAGTTCTTTTTCTGGAAGCCTGTGCCTGACAGTTGTACCTT
GGAAAGCAGCTGCTTCTCTCTCCGAGACATCACGTCCAGCTGGCCCCAGTGGCTCACCATTCTGACGCTG
GAAAGCATTTGGCTGGCTTTGACATTCTTTCTGCCTGTCCCTGGGTGCCCTACTGGCTACCTTGGCCCTG
GCGGTATAGGGGACTTGGGGAAGTATCCTCATTGTACTGGAGGAGCAGCTGGCTACATCGACCGCCTGCT
CCTGGGAGACAATCACCTGTACCAGCACCCATCCTCCACCGTGCTGTATCACACAGAGGTGGCCTACGAC
CCTGAAGGAGTCTTAGGGACTATCAACTCAATTGTGATGGCGTTTTTAGGAGTTCAGGCAGGAAAAATAC
TGGTGTATTACAAGGATCAGACGAAAGCCATCCTGACCCGATTTGCCGCCTGGTGCTGTATCCTTGGGCT
TATTTCTATTGTGTTGACAAAAGTGTCTGCAAATGAAGGTTTTATTCCAATAAACAAGAATCTCTGGTCC
ATCTCGTACGTCACCACACTGAGCTGCTTTGCCTTCTTCATCCTCCTCATTCTCTACCCAGTTGTGGATG
TGAAGGGCCTGTGGACGGGAACCCCCTTCTTCTATCCAGGGATGAACTCCATCCTGGTGTATGTTGGCCA
CGAGGTGTTGGAGAACTACTTCCCCTTCCAGTGGAAGCTGGCGGATGAGCAGTCACACAAAGAGCATCTC
ATTCAGAACATAGTCGCCACGGCTCTCTGGGTGCTCATCGCCTACGTGCTCTATAAAAAGAAGCTGTTTT
GGAAAATCTGA

Translation (656 aa):
MTGGSSSRRRRAEERSSAAGTERNSRREAVGGMGAGPALAALLLAGSVLSATLLAPGRRAEPDLDEKRNV
ELKMDQALLLIHNELLGTSLTVYWKSDDCYQCTFQPLANVSHGGKPAKPSVAPVSVSTQHGSILQVNSTS
EERAACRLEYKFGEFGNYSLLVQHASSGANKIACDIIVNENPVDSNLPVSIAFLVGLALIVAVSLLRLLL
SLDDVNNWISKTIASRETDRLINSELGSPSRADPLSADYQPETRRSSANRLRCVDTFRGLALVLMVFVNY
GGGKYWYFKHSSWNGLTVADLVFPWFVFIMGTSIFLSMTSILQRGCSKLKLLGKIVWRSFLLICIGVIIV
NPNYCLGPLSWDKVRIPGVLQRLGVTYFVVAVLEFFFWKPVPDSCTLESSCFSLRDITSSWPQWLTILTL
ESIWLALTFFLPVPGCPTGYLGPGGIGDLGKYPHCTGGAAGYIDRLLLGDNHLYQHPSSTVLYHTEVAYD
PEGVLGTINSIVMAFLGVQAGKILVYYKDQTKAILTRFAAWCCILGLISIVLTKVSANEGFIPINKNLWS
ISYVTTLSCFAFFILLILYPVVDVKGLWTGTPFFYPGMNSILVYVGHEVLENYFPFQWKLADEQSHKEHL
IQNIVATALWVLIAYVLYKKKLFWKI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH