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Report for CCDS21160.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21160.1 Public Mus musculus 7 Vstm2b 23 108 98 CCDS HistoryNCBI Gene:58188Re-query CCDS DB by CCDS ID:21160.1Re-query CCDS DB by GeneID:58188See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21160.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000044705.11 ENSMUSP00000044002.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000044705.11Link to Ensembl Protein Viewer:ENSMUSP00000044002.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000044705Re-query CCDS DB by Protein ID:ENSMUSP00000044002
Original member Current member EBI ENSMUST00000205845.1 ENSMUSP00000146231.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000205845.1Link to Ensembl Protein Viewer:ENSMUSP00000146231.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000205845Re-query CCDS DB by Protein ID:ENSMUSP00000146231
Original member NCBI NM_021387.3 NP_067362.1 Updated not alive Link to Nucleotide Sequence:NM_021387.3Link to Protein Sequence:NP_067362.1Re-query CCDS DB by Nucleotide ID:NM_021387Re-query CCDS DB by Protein ID:NP_067362
Current member NCBI NM_021387.4 NP_067362.1 Accepted alive Link to Nucleotide Sequence:NM_021387.4Link to Protein Sequence:NP_067362.1Re-query CCDS DB by Nucleotide ID:NM_021387Re-query CCDS DB by Protein ID:NP_067362Link to BLAST:NP_067362.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067362.1 285 Q9JME9 285 100% 0 0

Chromosomal Locations for CCDS 21160.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 40899368 40899449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 40900004 40900188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 40901250 40901279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 40902430 40902901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 40929373 40929461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (858 nt):
ATGGAACAGCGGAACCGGCTCGGCGCCCTCGGATACCTGCTACCTCTGCTACTGCACAGCCTGCTGCTCT
TCGTGGCCGACGCTACATTCACCGAAGTCCCCAAAGATGTAACCGTGCGAGAGGGTGACGATATCGAAAT
GCCCTGCGCGTTCCGGGCCAGCGGAGCCACCTCTTACTCGCTGGAGATTCAGTGGTGGTACCTCAAGGAG
CCTCCCCGGGAGCTGTTACACGAGCTGGCGCTCAGCGTGCCGGGCGCCCGGAGCAAGGTAACAAATAAGG
ATGCAACTAAAATCAGCACCGTGCGAGTCCAGGGCAATGACATCTCACACCGGCTTCGGCTGTCCGCCGT
ACGATTGCAGGACGAAGGTGTTTATGAATGTCGCGTTTCGGACTACAGCGATGATGACACTCAGGAGCAC
AAGGCCCAGGCATTGCTGCGTGTGCTATCGCGCTTCGCGCCGCCCAACATGCAAGCTGCAGAGGCAGTGT
CCCACATTCAGAGCAGCGGCCCGCGTCGCCACGGAGCCTCCAGTGCTGTCAGCTCCAACAACGCAGGCGC
TGCTGTCCGCACCACCTCTGAAACCAGCCACGATGACAAGAACCCACCTCCTGGGAGCCCTCCCGCTGGA
TCAGGAGTTCCTGAGGCCGCCGCTGCCGCTGCCTCCGCGACCCACACAGCCACCACAACTGCTGCTGCAG
CTGCTGCTTCTTCATCAGCATCACCACCATCAGGGCAGGCTGTCCTTCTGCGCCAGAGGCACGGCTCCGG
TACCGGCCCAGGCTACAGTGCCGATCCTCTGCTGTCTCTGCTCTTGTTAGCACTACATAAGTTCCTGCAC
CCACTTCTGGGCCACTGA

Translation (285 aa):
MEQRNRLGALGYLLPLLLHSLLLFVADATFTEVPKDVTVREGDDIEMPCAFRASGATSYSLEIQWWYLKE
PPRELLHELALSVPGARSKVTNKDATKISTVRVQGNDISHRLRLSAVRLQDEGVYECRVSDYSDDDTQEH
KAQALLRVLSRFAPPNMQAAEAVSHIQSSGPRRHGASSAVSSNNAGAAVRTTSETSHDDKNPPPGSPPAG
SGVPEAAAAAASATHTATTTAAAAAASSSASPPSGQAVLLRQRHGSGTGPGYSADPLLSLLLLALHKFLH
PLLGH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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