NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS21065.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21065.1 Public Mus musculus 7 Spred3 23 108 98 CCDS HistoryNCBI Gene:101809Re-query CCDS DB by CCDS ID:21065.1Re-query CCDS DB by GeneID:101809See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21065.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000048923.6 ENSMUSP00000046216.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000048923.6Link to Ensembl Protein Viewer:ENSMUSP00000046216.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000048923Re-query CCDS DB by Protein ID:ENSMUSP00000046216
Original member Current member NCBI NM_182927.3 NP_891557.3 Accepted alive Link to Nucleotide Sequence:NM_182927.3Link to Protein Sequence:NP_891557.3Re-query CCDS DB by Nucleotide ID:NM_182927Re-query CCDS DB by Protein ID:NP_891557Link to BLAST:NP_891557.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_891557.3 408 Q6P6N5 408 99.7549% 0 1

Chromosomal Locations for CCDS 21065.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 29161526 29162194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29162859 29162993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29166358 29166434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29166527 29166695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29167793 29167969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1227 nt):
ATGGTGCGGGTCCGAGCCGTGGTGATGGCCCGAGATGACTCCAGTGGGGGCTGGCTGCCTGTGGGGGGCG
GGGGCCTCAGCCAGGTGAGCGTATGTCGGGTCCGAGGGGCCAGGCCCGAGGGGGGGGCCCGCCAGGGGCA
CTACGTCATCCACGGGGAGCGGCTTCGGGACCAGAAAACCACCTTGGAGTGTACCCTGAGGCCAGGTTTG
GTTTACAACAAAGTGAATCCCATCTTCCACCATTGGAGCTTGGGGGACTGCAAGTTTGGGCTGACGTTTC
AGAGTCCTGCAGAAGCGGATGAGTTCCAGAAGAGCCTGCTGGCTGCGCTGGCTGCCCTGAGTCGAGGTTC
GCTGACTCCTTCCTCTTCCTCTTCCTCCTCCTCCCCTTCCCAGGACACTGCAGAGACTCCCTGCCCTCTG
ACGTCCCACGTGGACAGCGACTCCTCCTCCAGTCACAGCCGCCAGGAGACTCCTCCCACAGCTCCCATTG
CCACAGTGGAGTCAGCAGCTGCCTTCCCACTGGCCACGCCCCCACAAAGGCGCCGCTCCTCTGCTCAGAG
CTACCCTCCGCTTCTACCGTTCACTGGGATTCCTGAACCTTCAGAGTCTTTAGCTGGGGCAGGGAGCCAG
GGCTGGGGCAGCCGCGGCTATGAGGACTACCGGCGATCTGGACCACCGCCTCCACCTCTTGCCCTGTCTA
CCTGCGTTGTGCGCTTTGCCAAGACTGGTGCATTGCGGGGTGCAGCCCTGGGTCCTCCAGTGTCACTCCC
TGCCCCTCTCACAGAGGCTGCACCCCCAGCACCCCCTGCTCGTCCACCCCCAGGTCCAGGCCCCACCCCT
GCTCCAGCCAAAGCCTCCCCAGAGGCTGAGGAGGCTGCACGCTGTGTGCACTGCCGAGCACTCTTCCGCC
GCCGGGCAGATGGGCGTGGTGGTCGCTGCGCAGAGGCCCCTGACCCAGGTCGCCTGCTAGTGCGCCGGCT
CAGCTGCTTGTGGTGTGCCGAGAGCTTGCTGTACCACTGCCTGTCAGACGCCGAGGGTGACTTCTCGGAC
CCGTGTGCTTGTGAGCCAGGCCACCCACGCCCTGCTGCGCGCTGGGCTGCTCTGGCTGCTCTGTCTCTGG
CAGTGCCCTGTCTCTGTTGTTATGCGCCCCTGCGCGCCTGTCACTGGGTTGCAGCACGTTGTGGCTGTGC
GGGCTGTGGGGGTCGCCACGAGGAGGCTGCACGGTGA

Translation (408 aa):
MVRVRAVVMARDDSSGGWLPVGGGGLSQVSVCRVRGARPEGGARQGHYVIHGERLRDQKTTLECTLRPGL
VYNKVNPIFHHWSLGDCKFGLTFQSPAEADEFQKSLLAALAALSRGSLTPSSSSSSSSPSQDTAETPCPL
TSHVDSDSSSSHSRQETPPTAPIATVESAAAFPLATPPQRRRSSAQSYPPLLPFTGIPEPSESLAGAGSQ
GWGSRGYEDYRRSGPPPPPLALSTCVVRFAKTGALRGAALGPPVSLPAPLTEAAPPAPPARPPPGPGPTP
APAKASPEAEEAARCVHCRALFRRRADGRGGRCAEAPDPGRLLVRRLSCLWCAESLLYHCLSDAEGDFSD
PCACEPGHPRPAARWAALAALSLAVPCLCCYAPLRACHWVAARCGCAGCGGRHEEAAR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH