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Report for CCDS20457.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20457.1 Public Mus musculus 6 Or6d14 23 108 98 CCDS HistoryNCBI Gene:258754Re-query CCDS DB by CCDS ID:20457.1Re-query CCDS DB by GeneID:258754See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 20457.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000060204.5 ENSMUSP00000052730.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000060204.5Link to Ensembl Protein Viewer:ENSMUSP00000052730.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000060204Re-query CCDS DB by Protein ID:ENSMUSP00000052730
Original member Current member EBI ENSMUST00000203867.1 ENSMUSP00000145465.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000203867.1Link to Ensembl Protein Viewer:ENSMUSP00000145465.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000203867Re-query CCDS DB by Protein ID:ENSMUSP00000145465
Original member Current member EBI ENSMUST00000215846.1 ENSMUSP00000149188.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215846.1Link to Ensembl Protein Viewer:ENSMUSP00000149188.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000215846Re-query CCDS DB by Protein ID:ENSMUSP00000149188
Original member Current member EBI ENSMUST00000217313.1 ENSMUSP00000150737.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000217313.1Link to Ensembl Protein Viewer:ENSMUSP00000150737.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000217313Re-query CCDS DB by Protein ID:ENSMUSP00000150737
Original member Current member EBI ENSMUST00000214699.1 ENSMUSP00000150787.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214699.1Link to Ensembl Protein Viewer:ENSMUSP00000150787.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000214699Re-query CCDS DB by Protein ID:ENSMUSP00000150787
Original member Current member NCBI NM_146759.1 NP_666970.1 Accepted alive Link to Nucleotide Sequence:NM_146759.1Link to Protein Sequence:NP_666970.1Re-query CCDS DB by Nucleotide ID:NM_146759Re-query CCDS DB by Protein ID:NP_666970Link to BLAST:NP_666970.1

Chromosomal Locations for CCDS 20457.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 116556427 116557389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (963 nt):
ATGGCAAAAGAAGTGGAGGTAAGGATGAAGGCGTGGAATGAGACAACAGTCCTGGAGTTTGTCCTGGAGG
GCTTCCTTGTGGCTCAGCACCTGGGCAAGGTCCTCTTCCTCGTGCACCTGCTGGTGTATCTGGCCTCAGT
CACAGGAAATACTCTCATCATCGCCATCACGTGGTCCGATCCTCGCCTGCAGACCCCGATGTACTTCTTC
CTCAGGAGTTTCTCCTTTTGCGAGTGCTGTTTCATCTCCACCGTTATCCCGAAGCTCCTGGCGATCTTTC
TTTTTGGAGACAGAACAATTCATTTCACTCCCTGTATCATCCAAGCGTTTTCTTTTTTGTTTCTTGGGTC
CACAATTTTCTTCCACATGGCTGTGATGTCCTTGGATCGCTACCTAGCCATTTGCAAGCCTCTGCGCTAC
CCAGCCATCATGAACCCCAGGGTCTGTTTCCTTCTGGTTTTCTTCAGCTATGTGCTTTCCTTCATCCTAG
TAACCGGTGTGATTCTGAGGCTTTCCAGGCTGTCTTTCTGTGGCTCCAATGTCATTCCCCACTTCTTCTG
TGACCTTGGCTCCTTAATTCATCTCTCCTGTTCAGACACCAAATCTCTTGAAAGCATGGCCTTCGGTGTC
GCTGTGGTTGTCCTTTTCACATCTGTCCTTGCGGCTATATTTGCATATAGCAACATACTAATCTCAATCA
TGCGTCTTCCATTGGCCAAGGATCGACAGAAAGCTTTCTCCACCTGCTCATCCCACCTCATCGTCCTCTC
TCTGATGTATGGCAGCTGTGTGTTTATATATGTGAAACCGAAGCAAGTGAGCAGGCTTGAATCCAACAGA
GAGGCCGCTCTCGTAAACACGGTAGTGACGCCGCTTCTGAATCCTGTCATCTATACTCTGCGCAACAAGC
AGGTCCACCAAGCTCTGAGGGACGCACTATCCAGGGTGAACTTACAGAAATAG

Translation (320 aa):
MAKEVEVRMKAWNETTVLEFVLEGFLVAQHLGKVLFLVHLLVYLASVTGNTLIIAITWSDPRLQTPMYFF
LRSFSFCECCFISTVIPKLLAIFLFGDRTIHFTPCIIQAFSFLFLGSTIFFHMAVMSLDRYLAICKPLRY
PAIMNPRVCFLLVFFSYVLSFILVTGVILRLSRLSFCGSNVIPHFFCDLGSLIHLSCSDTKSLESMAFGV
AVVVLFTSVLAAIFAYSNILISIMRLPLAKDRQKAFSTCSSHLIVLSLMYGSCVFIYVKPKQVSRLESNR
EAALVNTVVTPLLNPVIYTLRNKQVHQALRDALSRVNLQK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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