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Report for CCDS28738.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28738.1 Public Mus musculus 17 Or2i1 23 108 98 CCDS HistoryNCBI Gene:258219Re-query CCDS DB by CCDS ID:28738.1Re-query CCDS DB by GeneID:258219See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 28738.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000055324.7 ENSMUSP00000055232.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000055324.7Link to Ensembl Protein Viewer:ENSMUSP00000055232.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000055324Re-query CCDS DB by Protein ID:ENSMUSP00000055232
Original member Current member NCBI NM_001011518.1 NP_001011518.1 Accepted alive Link to Nucleotide Sequence:NM_001011518.1Link to Protein Sequence:NP_001011518.1Re-query CCDS DB by Nucleotide ID:NM_001011518Re-query CCDS DB by Protein ID:NP_001011518Link to BLAST:NP_001011518.1

Chromosomal Locations for CCDS 28738.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 37196806 37197966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1161 nt):
ATGTGGCTATGTAACAAAACCAAAACTTGGGCATGTGCCGAGTTTATCCCATATTGGAGGTTCTTGTTTG
TTGTGGTTAGCGGTAAGACAGGGTTTTACTATGTAGCTCTGGCTGGCCTCGAACTCACAGAAATTTCTGG
CCTTTGCCTCCCAGCGCAAGGCCCGCAACACTGTCTAGCATTAAATATTTTTGTCTCGCCTTCCGAACCT
TCTTGGAGTTTTCCCCCTCAGGCTAACCACAGCTCAGCGGAGCGCTTCCTACTGCTGGGTTTCAGCGACT
GGCCCTCTCTGCAGCCTGTCCTCTTCGCACTGGTCCTTCTCTGCTACCTACTAACGCTCACCGGCAACGC
GGCGTTGGTGCTGCTGGCCATTCGCGACCCTCGCCTGCACACACCCATGTACTACTTCCTTTGCCACTTG
GCTCTGGTGGATGTGGGTTTCACCACTAGTGTGGTGCCACCGCTGCTGGCCAGCCTGCGCGGCTCAATGC
TGCAGCTACCGCGCGCTGGGTGCATGGCTCAGCTGTGCTCATCGCTGGCGCTGGGCTCCGCCGAGTGCGT
GCTGCTGGCCGTCATGGCGCTGGACCGCGCGGCTGCGGTATGCAACCCTCTGCGCTACACCTCACTGGCC
TCGCCGCTACTGTGCCGCACGCTGGCCGGAGTCTCCTGGCTCGGTGGCCTGGCCAACTCCGCGGCGCAGA
CCGCCCTGCTGGCCGCGCGTCCCCTGTGCGCACCCCGCTGTCTGGACCATTTCATCTGCGAGTTGCCGGC
GCTGCTGCAGCTGGCCTGCCGCGGCGGCCGCAGCGCCACCGAGCGCCAGATGTTCGCCGCGCGTGTGGTC
ATCCTGTTGGTGCCTTCGGCGGTCATCCTGGCCTCCTACATCGCCGTGGGCCGCGCGGTCTGGGGCATGC
ACTCCAGCTCTGGCTGGCGGAAAGCGGCGAGCACATGTGGCTCTCACTTGACCGCGGTCTGCCTATTTTA
TGGCTCTGCCACCTACACCTACCTGCAACCCACGCATAGTTACAACCAGGGCCGTGGCAAATTCGTCTCG
CTCTTCTACACGGTGGTCACTCCCGCTCTCAATCCTCTCATCTACACACTGAGGAACAAGGAAGTGAAGG
GGGCGGCACTGAGGCTCTTGCGGAGTCTGGGGAGGCCATAG

Translation (386 aa):
MWLCNKTKTWACAEFIPYWRFLFVVVSGKTGFYYVALAGLELTEISGLCLPAQGPQHCLALNIFVSPSEP
SWSFPPQANHSSAERFLLLGFSDWPSLQPVLFALVLLCYLLTLTGNAALVLLAIRDPRLHTPMYYFLCHL
ALVDVGFTTSVVPPLLASLRGSMLQLPRAGCMAQLCSSLALGSAECVLLAVMALDRAAAVCNPLRYTSLA
SPLLCRTLAGVSWLGGLANSAAQTALLAARPLCAPRCLDHFICELPALLQLACRGGRSATERQMFAARVV
ILLVPSAVILASYIAVGRAVWGMHSSSGWRKAASTCGSHLTAVCLFYGSATYTYLQPTHSYNQGRGKFVS
LFYTVVTPALNPLIYTLRNKEVKGAALRLLRSLGRP


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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