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Report for CCDS22386.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22386.1 Public Mus musculus 8 Rpl18a 23 108 98 CCDS HistoryNCBI Gene:76808Re-query CCDS DB by CCDS ID:22386.1Re-query CCDS DB by GeneID:76808See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22386.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000054220.9 ENSMUSP00000058368.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000054220.9Link to Ensembl Protein Viewer:ENSMUSP00000058368.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000054220Re-query CCDS DB by Protein ID:ENSMUSP00000058368
Original member Current member NCBI NM_029751.4 NP_084027.1 Accepted alive Link to Nucleotide Sequence:NM_029751.4Link to Protein Sequence:NP_084027.1Re-query CCDS DB by Nucleotide ID:NM_029751Re-query CCDS DB by Protein ID:NP_084027Link to BLAST:NP_084027.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084027.1 176 P62717 176 100% 0 0

Chromosomal Locations for CCDS 22386.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 70895415 70895507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70895600 70895709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70895916 70896045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70896133 70896312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70897359 70897376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (531 nt):
ATGAAGGCCTCGGGCACGCTTCGGGAGTACAAGGTGGTGGGGCGCTGCTTGCCAACCCCAAAATGCCACA
CACCACCACTGTACCGTATGCGAATCTTTGCACCCAACCATGTGGTGGCCAAGTCCCGCTTCTGGTACTT
TGTGTCACAGCTGAAGAAGATGAAGAAGTCATCCGGGGAAATTGTGTACTGCGGACAGGTGTTTGAGAAG
TCACCCCTGCGTGTGAAGAACTTTGGCATCTGGCTGCGCTATGACTCCCGCAGTGGCACACACAACATGT
ATCGGGAGTACAGGGACCTGACCACTGCTGGTGCAGTCACACAGTGCTACCGAGACATGGGTGCCCGACA
CCGTGCCCGTGCCCACTCCATCCAGATCATGAAGGTGGAAGAGATTGCAGCTGGCAAGTGCCGCCGGCCA
GCTGTCAAGCAGTTCCACGACTCCAAGATCAAATTCCCACTGCCCCACCGTGTGTTGCGGCGCCAGCACA
AGCCACGCTTCACCACCAAGAGGCCCAACACCTTCTTCTAG

Translation (176 aa):
MKASGTLREYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEK
SPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAAGKCRRP
AVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNTFF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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