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Report for CCDS23075.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23075.1 Public Mus musculus 9 Or4d5 23 108 98 CCDS HistoryNCBI Gene:258601Re-query CCDS DB by CCDS ID:23075.1Re-query CCDS DB by GeneID:258601See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 23075.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000056795.3 ENSMUSP00000060787.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000056795.3Link to Ensembl Protein Viewer:ENSMUSP00000060787.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000056795Re-query CCDS DB by Protein ID:ENSMUSP00000060787
Original member Current member EBI ENSMUST00000217536.2 ENSMUSP00000150287.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000217536.2Link to Ensembl Protein Viewer:ENSMUSP00000150287.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000217536Re-query CCDS DB by Protein ID:ENSMUSP00000150287
Original member Current member EBI ENSMUST00000213858.1 ENSMUSP00000150545.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000213858.1Link to Ensembl Protein Viewer:ENSMUSP00000150545.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000213858Re-query CCDS DB by Protein ID:ENSMUSP00000150545
Original member Current member EBI ENSMUST00000214856.1 ENSMUSP00000151081.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214856.1Link to Ensembl Protein Viewer:ENSMUSP00000151081.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000214856Re-query CCDS DB by Protein ID:ENSMUSP00000151081
Original member Current member NCBI NM_146608.1 NP_666819.1 Accepted alive Link to Nucleotide Sequence:NM_146608.1Link to Protein Sequence:NP_666819.1Re-query CCDS DB by Nucleotide ID:NM_146608Re-query CCDS DB by Protein ID:NP_666819Link to BLAST:NP_666819.1

Chromosomal Locations for CCDS 23075.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 40100544 40101488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (945 nt):
ATGAATCCAGCAAACCATTCCCAGGTGGCCACGTTCTTCCTCCTGGGTCTCTCTCAGGTATGGGAGCTTC
GGTTCCTATTCTTCACTGTCTTCTCAGCAGTGTATCTTTTGACTGTCACTGGCAATCTTCTTATTGTGGC
CATAGTGACCTCTGACCCGCGTTTGCACACAACTATGTATTTCCTCTTAGGCAACCTTTCATTCTTGGAC
TTCTGCTACTCGTCCATCACTGCCCCCAGGATGCTGGTTGATTTGCTCTCACACAGCCCCACCATTTCCT
TTGGTGCCTGCTTAACTCAGCTCTTCTTTTTCCACTTCATTGGAGGCATCAAGATATTCCTGCTGACTGT
CATGGCGTATGACCGTTACATAGCCATTTCTCAGCCCCTACGCTACACACTAATTATGAATCAGACAGTC
TGTGGGATCTTCATGGCAGCCTCGTGGGTGGGTGGTTTTATCCACTCCATTGTACAGGTTGGACTGACTA
TCCATCTGCCATTTTGTGGTCCCGACAAACTGGACAACTTTTATTGTGATGTTCCACAGCTGATCAAATT
GGCCTGTACCGATACCTTTGTCTTAGAGCTTCTGATGGTGTCTAACAATGGCTTGGTCACTCTCATGTGT
TTTCTGGTGCTGCTGGGCTCCTACACAGCCCTGCTTGTGATGCTCCGAAGTCACTCAAAAGAGGGTCGCA
GCAAGGCCCTGTCTACCTGTGCCTCTCACATTACTGTGGTGACTATAATTTTTGTACCTTGCATTTACAT
CTATGCAAGACCTTTTAGGACATTCCCCATGGACAAGGCAGTTTCTGTGCTATACACAATGGTCACCCCC
ATGCTGAATCCTGCCATTTATACCCTGAGAAATAAAGAAGTGATTGTAGCCATGAAAAAGCTATGGAGGA
GGAAGAAGGATTTTCTTGGTTCCTCAGATCATTGA

Translation (314 aa):
MNPANHSQVATFFLLGLSQVWELRFLFFTVFSAVYLLTVTGNLLIVAIVTSDPRLHTTMYFLLGNLSFLD
FCYSSITAPRMLVDLLSHSPTISFGACLTQLFFFHFIGGIKIFLLTVMAYDRYIAISQPLRYTLIMNQTV
CGIFMAASWVGGFIHSIVQVGLTIHLPFCGPDKLDNFYCDVPQLIKLACTDTFVLELLMVSNNGLVTLMC
FLVLLGSYTALLVMLRSHSKEGRSKALSTCASHITVVTIIFVPCIYIYARPFRTFPMDKAVSVLYTMVTP
MLNPAIYTLRNKEVIVAMKKLWRRKKDFLGSSDH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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