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Report for CCDS28744.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28744.1 Public Mus musculus 17 Or12d12 23 108 98 CCDS HistoryNCBI Gene:258831Re-query CCDS DB by CCDS ID:28744.1Re-query CCDS DB by GeneID:258831See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28744.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000058046.5 ENSMUSP00000061042.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000058046.5Link to Ensembl Protein Viewer:ENSMUSP00000061042.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000058046Re-query CCDS DB by Protein ID:ENSMUSP00000061042
Original member Current member EBI ENSMUST00000214376.1 ENSMUSP00000149603.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214376.1Link to Ensembl Protein Viewer:ENSMUSP00000149603.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000214376Re-query CCDS DB by Protein ID:ENSMUSP00000149603
Original member Current member EBI ENSMUST00000215392.1 ENSMUSP00000149851.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215392.1Link to Ensembl Protein Viewer:ENSMUSP00000149851.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000215392Re-query CCDS DB by Protein ID:ENSMUSP00000149851
Original member Current member NCBI NM_146834.2 NP_667045.1 Accepted alive Link to Nucleotide Sequence:NM_146834.2Link to Protein Sequence:NP_667045.1Re-query CCDS DB by Nucleotide ID:NM_146834Re-query CCDS DB by Protein ID:NP_667045Link to BLAST:NP_667045.1

Chromosomal Locations for CCDS 28744.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 37299494 37300420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (927 nt):
ATGTCTAATCAAACCTCAGTCACTGAATTTCTCCTCCTGGGAGTAACAGATATACAAGAATTAAACCCTA
TTCTCTTTGTGATTTTCTTCACCATCTACTTTATCAATATAACTGGAAATGGAGCCATCCTGATGATTGT
CATCTTGGACCCAAGACTCCACTCACCTATGTATTTCTTCCTGGGAAACCTAGCATGTCTAGATATCTCC
TATTCTACTGTAACAGTGCCAAAGCTGTTGCAGAACCTCCTCTCCACAAGCAAAGCTATTTCCTTCTTGG
GATGCATAACTCAGCTTCATTTCTTCCACTTCCTGGGTAGCACTGAGACCATGCTGCTGCCAGTGATGGC
ATTTGACCGCTTTGTGGCTATCTGCAGACCACTCCACTATTCTGTGATCATGAATCACCAGCTCTGTATT
CACATGACTGTTACTATCTGGACCCTGGGCTTTTTCCATGCCTTGCTTCACTCTGTAATGACATCTCGTT
TGAGCTTCTGTGGTCCCAATCATGTCCATCATTTCTTCTGTGATATTAAGCCATTGCTGGATCTGGCCTG
TGGAAACACTGAGCTCAACCTTTGGCTGCTCAATACAGTCACAGGCACCATTGCCCTCACTTCCTTTTTT
CTGATATTTCTCTCTTATTTCTACATCATCACCAATCTTCTCCTCAAGACCCGTTCTTGCAGCATGCTCC
ACAAAGCTCTGTCTACCTGTGCCTCCCACTTCATGGTTGTTGTTCTGTTCTATGCTCCTGTTCTCTTCAC
CTACATCCGTCCTGCCTCAGGCAGCTCTCTGGATCAGGATACAATCATCGCCATCATGTACAGTGTGGTC
ACCCCTGCTCTCAATCCACTCATCTACACCTTGAGAAACAAGGAAGTGAGGAGTGCATTGAATAGAAAGG
TGAGAAGATGGCTCTGA

Translation (308 aa):
MSNQTSVTEFLLLGVTDIQELNPILFVIFFTIYFINITGNGAILMIVILDPRLHSPMYFFLGNLACLDIS
YSTVTVPKLLQNLLSTSKAISFLGCITQLHFFHFLGSTETMLLPVMAFDRFVAICRPLHYSVIMNHQLCI
HMTVTIWTLGFFHALLHSVMTSRLSFCGPNHVHHFFCDIKPLLDLACGNTELNLWLLNTVTGTIALTSFF
LIFLSYFYIITNLLLKTRSCSMLHKALSTCASHFMVVVLFYAPVLFTYIRPASGSSLDQDTIIAIMYSVV
TPALNPLIYTLRNKEVRSALNRKVRRWL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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