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Report for CCDS16032.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16032.1 Public Mus musculus 2 Tnfaip6 23 108 98 CCDS HistoryNCBI Gene:21930Re-query CCDS DB by CCDS ID:16032.1Re-query CCDS DB by GeneID:21930See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 16032.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000065927.5 ENSMUSP00000069231.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000065927.5Link to Ensembl Protein Viewer:ENSMUSP00000069231.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000065927Re-query CCDS DB by Protein ID:ENSMUSP00000069231
Original member Current member NCBI NM_009398.2 NP_033424.1 Accepted alive Link to Nucleotide Sequence:NM_009398.2Link to Protein Sequence:NP_033424.1Re-query CCDS DB by Nucleotide ID:NM_009398Re-query CCDS DB by Protein ID:NP_033424Link to BLAST:NP_033424.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033424.1 275 O08859 275 100% 0 0

Chromosomal Locations for CCDS 16032.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 52038176 52038269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 52043729 52043866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 52047431 52047592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 52050843 52051071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 52052304 52052344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 52055808 52055971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (828 nt):
ATGGTCGTCCTCCTTTGCTTATGCGTCTTGCTGTGGGAAGAGGCTCACGGATGGGGATTCAAGAACGGGA
TCTTTCATAACTCCATATGGCTTGAACAAGCAGCGGGCGTATACCACAGAGAAGCTCGGGCTGGCAGATA
CAAGCTCACCTACGCCGAAGCCAAGGCCGTATGTGAATTTGAAGGTGGTCGTCTCGCAACCTACAAGCAG
CTAGAGGCAGCCAGAAAAATTGGATTCCATGTCTGTGCTGCTGGATGGATGGCCAAGGGTAGAGTCGGAT
ACCCCATTGTGAAACCTGGGCCCAACTGTGGATTTGGGAAAACGGGTATCATCGATTATGGAATCCGGCT
CAACAGGAGTGAGCGATGGGATGCCTATTGCTACAACCCACATGCAAAGGAGTGTGGTGGTGTCTTCACA
GATCCGAAGCGAATTTTTAAATCCCCGGGCTTCCCAAATGAGTACGATGACAACCAGGTCTGCTACTGGC
ACATTCGGCTCAAGTACGGTCAGCGAATTCACCTGAGCTTTTTGGACTTTGACCTTGAACATGATCCAGG
CTGCTTGGCTGACTATGTAGAAATCTATGACAGTTATGATGACGTCCACGGCTTTGTAGGAAGATACTGT
GGTGATGAACTTCCAGAAGACATCATTAGCACAGGAAATGTCATGACCTTGAAGTTTCTGAGTGATGCAT
CCGTCACGGCTGGAGGCTTCCAGATTAAATACGTCACAGTGGATCCTGCATCTAAATCCAGTCAAGCCAA
AAATACAAGTACTACTGGAAATAAGAAGTTCTTACCTGGAAGGTTTAGCCATCTATAA

Translation (275 aa):
MVVLLCLCVLLWEEAHGWGFKNGIFHNSIWLEQAAGVYHREARAGRYKLTYAEAKAVCEFEGGRLATYKQ
LEAARKIGFHVCAAGWMAKGRVGYPIVKPGPNCGFGKTGIIDYGIRLNRSERWDAYCYNPHAKECGGVFT
DPKRIFKSPGFPNEYDDNQVCYWHIRLKYGQRIHLSFLDFDLEHDPGCLADYVEIYDSYDDVHGFVGRYC
GDELPEDIISTGNVMTLKFLSDASVTAGGFQIKYVTVDPASKSSQAKNTSTTGNKKFLPGRFSHL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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