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Report for CCDS23667.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23667.1 Public Mus musculus 9 Ccr1l1 23 108 98 CCDS HistoryNCBI Gene:12770Re-query CCDS DB by CCDS ID:23667.1Re-query CCDS DB by GeneID:12770See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23667.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000071404.4 ENSMUSP00000071353.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000071404.4Link to Ensembl Protein Viewer:ENSMUSP00000071353.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000071404Re-query CCDS DB by Protein ID:ENSMUSP00000071353
Original member Current member NCBI NM_007718.4 NP_031744.3 Accepted alive Link to Nucleotide Sequence:NM_007718.4Link to Protein Sequence:NP_031744.3Re-query CCDS DB by Nucleotide ID:NM_007718Re-query CCDS DB by Protein ID:NP_031744Link to BLAST:NP_031744.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031744.3 356 P51676 356 100% 0 0

Chromosomal Locations for CCDS 23667.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 123977338 123978408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1071 nt):
ATGGAGATTCCAGCTGTCACAGAGCCCTCCTACAACACAGTTGCCAAGAATGACTTCATGTCTGGATTCT
TATGCTTCAGCATAAATGTGAGGGCATTTGGAATCACAGTGCTGACTCCCCTGTACTCCCTGGTGTTCAT
CATTGGCGTGATAGGCCATGTCTTGGTGGTTCTGGTGCTCATACAACACAAGAGGCTTCGAAACATGACC
AGCATCTACCTGTTCAACCTGGCTATCTCTGATCTGGTCTTCCTCTCCACATTACCTTTCTGGGTTGACT
ATATCATGAAAGGAGACTGGATTTTTGGTAACGCCATGTGTAAGTTTGTGTCTGGATTTTATTACCTGGG
CTTGTATAGTGACATGTTTTTCATCACCCTGCTTACGATTGATAGATACCTAGCTGTTGTCCATGTCGTG
TTTGCCCTGAGAGCCCGGACTGTCACTTTTGGCATCATCAGTAGCATCATTACCTGGGTCCTGGCTGCCT
TGGTTTCTATTCCTTGTCTCTATGTTTTCAAATCCCAGATGGAGTTCACTTACCATACCTGCAGAGCAAT
TTTGCCCAGGAAGAGCCTGATACGTTTTTTAAGGTTTCAGGCTCTAACAATGAACATCCTTGGGCTAATT
TTGCCTCTGTTGGCCATGATTATCTGCTACACACGGATCATCAATGTTTTACACAGAAGACCCAATAAGA
AGAAGGCCAAAGTCATGCGCCTGATTTTTGTTATTACGCTTCTCTTCTTCCTCCTCTTGGCCCCTTATTA
TCTGGCTGCCTTTGTTTCTGCTTTTGAAGACGTCCTATTCACCCCTAGTTGTTTGAGAAGCCAACAGGTG
GACCTGTCCTTGATGATAACTGAAGCACTTGCCTACACCCACTGCTGTGTCAACCCAGTCATTTATGTCT
TTGTGGGTAAACGGTTCCGGAAGTACCTCTGGCAGTTGTTTCGGAGGCATACAGCTATAACCCTGCCACA
ATGGCTGCCCTTCCTCTCGGTGGACAGAGCACAGAGGGCCAGTGCCACGCCTCCATCCACAGTGGAAATT
GAGACCTCTGCCGACTTATAA

Translation (356 aa):
MEIPAVTEPSYNTVAKNDFMSGFLCFSINVRAFGITVLTPLYSLVFIIGVIGHVLVVLVLIQHKRLRNMT
SIYLFNLAISDLVFLSTLPFWVDYIMKGDWIFGNAMCKFVSGFYYLGLYSDMFFITLLTIDRYLAVVHVV
FALRARTVTFGIISSIITWVLAALVSIPCLYVFKSQMEFTYHTCRAILPRKSLIRFLRFQALTMNILGLI
LPLLAMIICYTRIINVLHRRPNKKKAKVMRLIFVITLLFFLLLAPYYLAAFVSAFEDVLFTPSCLRSQQV
DLSLMITEALAYTHCCVNPVIYVFVGKRFRKYLWQLFRRHTAITLPQWLPFLSVDRAQRASATPPSTVEI
ETSADL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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