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Report for CCDS21567.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21567.1 Public Mus musculus 7 Usp17ld 23 108 98 CCDS HistoryNCBI Gene:384701Re-query CCDS DB by CCDS ID:21567.1Re-query CCDS DB by GeneID:384701See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21567.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000073394.2 ENSMUSP00000073107.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000073394.2Link to Ensembl Protein Viewer:ENSMUSP00000073107.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000073394Re-query CCDS DB by Protein ID:ENSMUSP00000073107
Original member Current member NCBI NM_001001559.2 NP_001001559.2 Accepted alive Link to Nucleotide Sequence:NM_001001559.2Link to Protein Sequence:NP_001001559.2Re-query CCDS DB by Nucleotide ID:NM_001001559Re-query CCDS DB by Protein ID:NP_001001559Link to BLAST:NP_001001559.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001001559.2 545 G5E8G2 545 100% 0 0

Chromosomal Locations for CCDS 21567.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 103250086 103251695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 103252478 103252505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1638 nt):
ATGGTGGTTTCTCTTTCCTTCCCAGAAGCAGATCCAGCCCTATCATCTCCTGGTGCCCAACAGCTGCATC
AGGATGAAGCTCAGGTAGTGGTGGAGCTAACTGCCAATGACAAGCCCAGTCTGAGTTGGGAATGTCCCCA
AGGACCAGGATGCGGGCTTCAGAACACAGGCAACAGCTGCTACCTGAATGCAGCCCTGCAGTGCTTGACA
CACACACCACCTCTAGCTGACTACATGCTGTCCCAGGAGTACAGTCAAACCTGTTGTTCCCCAGAAGGCT
GTAAGATGTGTGCTATGGAAGCCCATGTAACCCAGAGTCTCCTGCACTCTCACTCGGGGGATGTCATGAA
GCCCTCCCAGATTTTGACCTCTGCCTTCCACAAGCACCAGCAGGAAGATGCCCATGAGTTTCTCATGTTC
ACCTTGGAAACAATGCATGAATCCTGCCTTCAAGTGCACAGACAATCAGAACCCACCTCTGAGGACAGCT
CACCCATTCATGACATATTTGGAGGCTTGTGGAGGTCTCAGATCAAGTGTCTCCATTGCCAGGGTACCTC
AGATACATATGATCGCTTCCTGGATGTCCCCCTGGATATCAGCTCAGCTCAGAGTGTAAATCAAGCCTTG
TGGGATACAGAGAAGTCAGAAGAGCTACGTGGAGAGAATGCCTACTACTGTGGTAGGTGTAGACAGAAGA
TGCCAGCTTCCAAGACCCTGCATATTCATAGTGCCCCAAAGGTACTCCTGCTAGTGTTAAAGCGCTTCTC
GGCCTTCATGGGTAACAAGTTGGACAGAAAAGTAAGCTACCCGGAGTTCCTTGACCTGAAGCCATACCTG
TCCCAGCCTACTGGAGGACCTTTGCCTTATGCCCTCTATGCTGTCCTGGTCCATGAAGGTGCGACTTGTC
ACAGTGGACATTACTTCTCTTATGTCAAAGCTGGACATGGGAAGTGGTACAAGATGGATGATACTAAGGT
CACCAGCTGCGATGTGACTTCTGTCCTGAATGAGAATGCCTATGTGCTCTTCTATGTGCAGCAGACTGAC
CTCAAAGAGGTCAGTATTGACATGCCAGAGGGCAGAATACATGAGGTTCTCGACCCTGAATACCAGCTGA
AGAAATCCCGGAGAAAAAAGCATAAGAAGAAAAGCCCTTGCACAGAAGATGTGGGAGAGCCCTCCAAAAA
CAGGGAGAAGAAAGCAACCAAAGAAACCTCCTTAGGGGAGGGGAAAGTGCTTCAGGAAAAGAACCACAAG
AAAGCTGGGCAGAAACACGAGAATACCAAACTCGTGCCTCAGGAACAGAACCACCAGAAACTGGGGCAGA
AACACAGGAACAATGAAATCTTGCCTCAGGAACAGAACCACCAGAAAACTGGGCAGAGCCTCAGGAACAC
GGAAGGTGAACTTGATCTGCCTGCTGATGCAATTGTGATTCACCTGCCCAGATCCATAGCAAATTGGGGC
AGGGATACTCCAGACAAGGTGAATCAACCCTGGCACAATGCTGACAGGCTCCTCACCTCTCAGGACCTTG
TGAACACTGGGCAGCTCTGTAGACAGGAAGGAAGACGAAGATCGAAGAAGGGGAAGAACAAGAACAAGCA
AGGGCAGAAGCTTCTGCTTGTTCGCTAG

Translation (545 aa):
MVVSLSFPEADPALSSPGAQQLHQDEAQVVVELTANDKPSLSWECPQGPGCGLQNTGNSCYLNAALQCLT
HTPPLADYMLSQEYSQTCCSPEGCKMCAMEAHVTQSLLHSHSGDVMKPSQILTSAFHKHQQEDAHEFLMF
TLETMHESCLQVHRQSEPTSEDSSPIHDIFGGLWRSQIKCLHCQGTSDTYDRFLDVPLDISSAQSVNQAL
WDTEKSEELRGENAYYCGRCRQKMPASKTLHIHSAPKVLLLVLKRFSAFMGNKLDRKVSYPEFLDLKPYL
SQPTGGPLPYALYAVLVHEGATCHSGHYFSYVKAGHGKWYKMDDTKVTSCDVTSVLNENAYVLFYVQQTD
LKEVSIDMPEGRIHEVLDPEYQLKKSRRKKHKKKSPCTEDVGEPSKNREKKATKETSLGEGKVLQEKNHK
KAGQKHENTKLVPQEQNHQKLGQKHRNNEILPQEQNHQKTGQSLRNTEGELDLPADAIVIHLPRSIANWG
RDTPDKVNQPWHNADRLLTSQDLVNTGQLCRQEGRRRSKKGKNKNKQGQKLLLVR


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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