NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS52886.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52886.1 Public Mus musculus 9 Plscr1 23 108 98 CCDS HistoryNCBI Gene:22038Re-query CCDS DB by CCDS ID:52886.1Re-query CCDS DB by GeneID:22038See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52886.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000093801.9 ENSMUSP00000091318.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000093801.9Link to Ensembl Protein Viewer:ENSMUSP00000091318.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000093801Re-query CCDS DB by Protein ID:ENSMUSP00000091318
Original member Current member EBI ENSMUST00000186364.1 ENSMUSP00000139479.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000186364.1Link to Ensembl Protein Viewer:ENSMUSP00000139479.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000186364Re-query CCDS DB by Protein ID:ENSMUSP00000139479
Original member NCBI NM_011636.2 NP_035766.2 Updated not alive Link to Nucleotide Sequence:NM_011636.2Link to Protein Sequence:NP_035766.2Re-query CCDS DB by Nucleotide ID:NM_011636Re-query CCDS DB by Protein ID:NP_035766
Current member NCBI NM_011636.3 NP_035766.2 Accepted alive Link to Nucleotide Sequence:NM_011636.3Link to Protein Sequence:NP_035766.2Re-query CCDS DB by Nucleotide ID:NM_011636Re-query CCDS DB by Protein ID:NP_035766Link to BLAST:NP_035766.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035766.2 328 Q9JJ00 328 100% 0 0

Chromosomal Locations for CCDS 52886.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 92258062 92258074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 92259274 92259354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 92263033 92263277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 92264646 92264688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 92266391 92266611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 92266712 92266873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 92269815 92269976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 92271529 92271588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (987 nt):
ATGGAAAACCACAGCAAGCAAACTGAGGCTCCCCACCCGGGAACATATATGCCAGCTGGGTATCCCCCTC
CGTATCCACCAGCAGCTTTCCAAGGACCTTCAGACCATGCTGCTTACCCCATACCCCAGGCTGGCTACCA
AGGGCCTCCGGGCCCCTATCCAGGGCCCCAACCTGGCTACCCAGTCCCACCAGGAGGTTATGCAGGTGGT
GGCCCTAGTGGCTTTCCTGTCCAAAATCAGCCAGCATATAATCATCCAGGTGGGCCTGGGGGGACCCCAT
GGATGCCAGCCCCCCCTCCTCCACTGAACTGTCCACCGGGGCTGGAATACTTAGCTCAGATTGATCAGCT
TCTGGTTCATCAGCAAATTGAGCTTCTGGAAGTCTTAACAGGCTTTGAAACAAATAACAAATATGAAATC
AAGAACAGCCTCGGGCAGAGAGTTTACTTTGCAGTGGAAGATACTGACTGCTGTACCCGAAACTGCTGTG
GGGCGTCTAGACCTTTCACCTTGAGGATCCTGGATAATCTGGGCCGAGAAGTCATGACTCTGGAGAGACC
TCTGAGATGCAGTAGCTGCTGCTTCCCCTGCTGCCTCCAGGAGATAGAAATCCAGGCTCCTCCTGGGGTA
CCAGTAGGTTATGTGACTCAGACCTGGCACCCATGTCTGCCCAAGTTCACTCTCCAAAATGAGAAGAAGC
AGGATGTCCTGAAAGTAGTTGGTCCGTGTGTTGTGTGTAGCTGCTGTTCCGACATTGACTTTGAGCTCAA
ATCTCTAGATGAAGAATCAGTAGTTGGCAAAATTTCTAAGCAGTGGTCTGGTTTTGTGAGAGAGGCCTTC
ACGGATGCAGACAATTTTGGGATCCAGTTCCCGCTAGACCTGGATGTGAAGATGAAAGCTGTGATGCTTG
GTGCTTGTTTCCTCATAGATTTCATGTTTTTTGAAAGAACTGGAAACGAGGAGCAAAGATCAGGAGCATG
GCAGTAA

Translation (328 aa):
MENHSKQTEAPHPGTYMPAGYPPPYPPAAFQGPSDHAAYPIPQAGYQGPPGPYPGPQPGYPVPPGGYAGG
GPSGFPVQNQPAYNHPGGPGGTPWMPAPPPPLNCPPGLEYLAQIDQLLVHQQIELLEVLTGFETNNKYEI
KNSLGQRVYFAVEDTDCCTRNCCGASRPFTLRILDNLGREVMTLERPLRCSSCCFPCCLQEIEIQAPPGV
PVGYVTQTWHPCLPKFTLQNEKKQDVLKVVGPCVVCSCCSDIDFELKSLDEESVVGKISKQWSGFVREAF
TDADNFGIQFPLDLDVKMKAVMLGACFLIDFMFFERTGNEEQRSGAWQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH