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Report for CCDS49951.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49951.1 Public Mus musculus 17 Smok2a 23 108 98 CCDS HistoryNCBI Gene:27263Re-query CCDS DB by CCDS ID:49951.1Re-query CCDS DB by GeneID:27263See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 49951.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000080647.4 ENSMUSP00000094432.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000080647.4Link to Ensembl Protein Viewer:ENSMUSP00000094432.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000080647Re-query CCDS DB by Protein ID:ENSMUSP00000094432
Original member NCBI NM_013741.1 NP_038769.1 Updated not alive Link to Nucleotide Sequence:NM_013741.1Link to Protein Sequence:NP_038769.1Re-query CCDS DB by Nucleotide ID:NM_013741Re-query CCDS DB by Protein ID:NP_038769
Current member NCBI NM_013741.2 NP_038769.1 Accepted alive Link to Nucleotide Sequence:NM_013741.2Link to Protein Sequence:NP_038769.1Re-query CCDS DB by Nucleotide ID:NM_013741Re-query CCDS DB by Protein ID:NP_038769Link to BLAST:NP_038769.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038769.1 504 Q9QYZ6 504 99.6032% 0 2

Chromosomal Locations for CCDS 49951.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 13225538 13227052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1515 nt):
ATGGGGTCTGGGAGTCAACAGAAGTCAGAAAAGCTCAGATCCAAGCCCCCTTTCTCTGAAATGGAGAACT
TTCATGCTCAATATGAGATGCTAGGGACTATTGGCCATGGAGGCAGCACAAAGGTGAAGCTGGCCCGACA
CCGCCTCACAGGCACCCACGTGGCTGTCAAAATGATTCCAAAGAGGGAGTATTGGTGCAAACCTCTCATG
TCTGAGGCAGAGTTACTGATGATGGCCGATCATCCGAATATCATCTCTCTCCTTCAAGTCATTGAGACCA
AGAAGAAAGTATACCTCATTATGGAGTTGTGTGAGGGTAAATCACTTTACCAACACATCAGAAACGCTGG
CTACCTGCAGGAGGATGAAGCACGAGCATTATTCAAGCAGCTCTTAAGTGCTATAAACTACTGCCACAAC
CAGGGTATAGTTCACAGGGACCTGAAACCTGACAATATTATGGTAGAAAAAGATGGGAGAGTAAAGATCA
TTGATTTTGGACTTGGCATCCAAGTGAAGCCAGGGCAAAAACTAAACTTATTCTGTGGGACTTACCCATT
TAGTGCTCCTGAGGTGCTCCTTAGCAGACCCTATGATGGGCCCAAGATCGATGTATGGACTCTTGGAGTT
GTGCTATACTTTATGGTAACTGGAAAGATCCCATTTGATGCTGCCAGCATAGAAAAGCTGCGGAAGCAAA
TTGTTGCAGGAAAGTATTCTGTTCCCTGTAGACTGTCAGTAAAGCTTCATCACCTGATTACTCTTTTAAT
GACAGACAACCCTGAACTTAGGCCCACTGTTGCTGAAGTTATGATGCATCCCTGGGTCACAAAAGGCTCA
GGGGTGTTCCCAGATCCTTGTGAAGAACAGATACCCCTCAAGCCAGACCCTGCGATTGTAAAAGCAATGG
GACATATTGGGTTCCAAGCTCAAGACATTGAAGATTCTTTACGTCAGAGAAAATTCAACGAAACCATGGC
ATCTTATTGTCTACTGAAAAAACAGATTCTTAAGGAATGTGACAGGCCAATCCGGGCTCAGCCCATGAAT
CCATCGGTGACCCCATTCCCCTCCCTTGTTGATACTCCTACTTTCCATCTCGGACTTCGGAGGAGAGAGA
CTGAACCCACGAGTCTCAGATTATCTGCTAATAGGCAAATGTCTGTCTGTGGAAGGAGTACTAGTAAGAA
AAGAGACAGAAGTTTCAGTTGGCCCGGTGTTCTCAGCAGGCCGATTAACATAACACCCACAATGGACCAA
ACACACACCTGTACTAGGAGTGTTCCCTGCATTAACTCAAATTTTTGCATAATCCATCCAAACAGCAGCG
ACGAGAGTACAGAAGGCCACACCAGTGCCTCAGCAGAGGATAAGCCTGTCCGCAGCAGAGGCTGGCCCAG
AGGCATCAAGGGCTGGACTAGCAAGATAGGAAATGCGATGAGGAAGCTCTGTTGCTGTATCCCATCAAAT
GAGACATCTCACCTGGGGCAGAGGAGAGTCTCCCCCAAAAAATAA

Translation (504 aa):
MGSGSQQKSEKLRSKPPFSEMENFHAQYEMLGTIGHGGSTKVKLARHRLTGTHVAVKMIPKREYWCKPLM
SEAELLMMADHPNIISLLQVIETKKKVYLIMELCEGKSLYQHIRNAGYLQEDEARALFKQLLSAINYCHN
QGIVHRDLKPDNIMVEKDGRVKIIDFGLGIQVKPGQKLNLFCGTYPFSAPEVLLSRPYDGPKIDVWTLGV
VLYFMVTGKIPFDAASIEKLRKQIVAGKYSVPCRLSVKLHHLITLLMTDNPELRPTVAEVMMHPWVTKGS
GVFPDPCEEQIPLKPDPAIVKAMGHIGFQAQDIEDSLRQRKFNETMASYCLLKKQILKECDRPIRAQPMN
PSVTPFPSLVDTPTFHLGLRRRETEPTSLRLSANRQMSVCGRSTSKKRDRSFSWPGVLSRPINITPTMDQ
THTCTRSVPCINSNFCIIHPNSSDESTEGHTSASAEDKPVRSRGWPRGIKGWTSKIGNAMRKLCCCIPSN
ETSHLGQRRVSPKK


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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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