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Report for CCDS21538.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21538.1 Public Mus musculus 7 Or52m2 23 108 98 CCDS HistoryNCBI Gene:233578Re-query CCDS DB by CCDS ID:21538.1Re-query CCDS DB by GeneID:233578See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 21538.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000098222.1 ENSMUSP00000095825.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000098222.1Link to Ensembl Protein Viewer:ENSMUSP00000095825.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000098222Re-query CCDS DB by Protein ID:ENSMUSP00000095825
Original member Current member EBI ENSMUST00000216776.1 ENSMUSP00000149901.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216776.1Link to Ensembl Protein Viewer:ENSMUSP00000149901.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216776Re-query CCDS DB by Protein ID:ENSMUSP00000149901
Original member Current member NCBI NM_207621.1 NP_997504.1 Accepted alive Link to Nucleotide Sequence:NM_207621.1Link to Protein Sequence:NP_997504.1Re-query CCDS DB by Nucleotide ID:NM_207621Re-query CCDS DB by Protein ID:NP_997504Link to BLAST:NP_997504.1

Chromosomal Locations for CCDS 21538.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 102614007 102614987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (981 nt):
ATGTATCCCACACTCCCAAGCATGTTCGTTTCTAATAATGCCTGCTCAGTACCCAGCTCTTTCTGGCTCA
CTGGCATCCCAGGATTGGAGTCCCTGCACATGTGGCTTTCCATCCCCTTTGGCTCCATGTACCTGGTGGC
TGTGGTGGGGAACATCACCATCCTGGCAGTGGTTAAGACAGAGCGCAGCCTGCACCAGCCCATGTATTTC
TTCCTGTGTATGTTGGCTGTTATTGACTTGGTCCTGTCAACTTCTACAATGCCCAAACTATTGGCCATCT
TCTGGTTTGGTGCCTGCAGCATTGGTCTAGACGCCTGCTTAGTTCAGATGTTCTTTGTCCACTGCTTTGC
TACTGTTGAGTCGGGCATCTTTCTTGCCATGGCTTTCGACCGCTATGTGGCCATCTGTGACCCACTACAC
CATACATCAGTACTTACCCATGCAGTGGTGGGACGCTTGGGGTTGGCTGCACTTCTCCGAGGAGTATTCT
ACATTGGACCTCTTCCACTTCTAATTCGCCTAAGGCTGCCCTTTTTTCGAACCCAAATCATTGCCCACTC
TTACTGTGAGCACATGGCTGTGGTCACTTTGGCATGTGGTGACACAAAAGTCAATAATCTGTATGGAATG
GGAATTGGTTTTCTGGTGTTAATCCTAGACTCCATAGCTATAACTGCATCTTATATAATGATTTTCAGAG
CTGTGTTAGGATTGTCCACCTCTGATGCCAGGTTTAAAACTTTAGGAACATGTGGTTCTCACATCTGTGC
CATCCTTGTCTTCTACATTCCTATTGCTGTTTCATCTCTCACCCATCGTTTCGGCCACAATGTGCCTTCG
CATATCCATATTCTTTTGGCCAACTTTTACCTCCTCATCCCACCCATCCTCAACCCAGTTGTCTATGCTG
TGCGCACCAAGCAGATCCGAGAGAGACTTTTGCATATTATTAAGTCTGGAACTCAACACAAGGACATGTA
A

Translation (326 aa):
MYPTLPSMFVSNNACSVPSSFWLTGIPGLESLHMWLSIPFGSMYLVAVVGNITILAVVKTERSLHQPMYF
FLCMLAVIDLVLSTSTMPKLLAIFWFGACSIGLDACLVQMFFVHCFATVESGIFLAMAFDRYVAICDPLH
HTSVLTHAVVGRLGLAALLRGVFYIGPLPLLIRLRLPFFRTQIIAHSYCEHMAVVTLACGDTKVNNLYGM
GIGFLVLILDSIAITASYIMIFRAVLGLSTSDARFKTLGTCGSHICAILVFYIPIAVSSLTHRFGHNVPS
HIHILLANFYLLIPPILNPVVYAVRTKQIRERLLHIIKSGTQHKDM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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