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Report for CCDS17052.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17052.1 Public Mus musculus 2 Spint5 23 108 98 CCDS HistoryNCBI Gene:641368Re-query CCDS DB by CCDS ID:17052.1Re-query CCDS DB by GeneID:641368See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 17052.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000103097.9 ENSMUSP00000099386.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000103097.9Link to Ensembl Protein Viewer:ENSMUSP00000099386.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000103097Re-query CCDS DB by Protein ID:ENSMUSP00000099386
Original member Current member NCBI NM_001040055.1 NP_001035144.1 Accepted alive Link to Nucleotide Sequence:NM_001040055.1Link to Protein Sequence:NP_001035144.1Re-query CCDS DB by Nucleotide ID:NM_001040055Re-query CCDS DB by Protein ID:NP_001035144Link to BLAST:NP_001035144.1

Chromosomal Locations for CCDS 17052.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 164715345 164715474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164716046 164716054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164716995 164717164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164717975 164717983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (318 nt):
ATGGCGGGTCCAGGGATTCGCCTTGCCCTGTGGCTTCTAACGTTTGCCATGTCCCTGTCAATGCTATCTA
GTAGTTTGCTATATCCTGCAGGAGTCCGAAGTCAACTCTGCGAAAGCGGGCACCTTGGAGCGAAAAGAAT
AATATGCAACCAACCGGTAAAGAAGGGCTTCTGCAGCTTCACTTTCTACAGATACTACTTCAACCCAGAA
TCGGCCCTATGTGAGTCCTTCATCTTCACTGGCTGCGGGGGCAACAGAAACAACTTTAAAACTAAATACC
TCTGTGAAGTCCGTTGCATTCACGTAGAGAAGGACTAA

Translation (105 aa):
MAGPGIRLALWLLTFAMSLSMLSSSLLYPAGVRSQLCESGHLGAKRIICNQPVKKGFCSFTFYRYYFNPE
SALCESFIFTGCGGNRNNFKTKYLCEVRCIHVEKD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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