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Report for CCDS38467.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38467.1 Public Mus musculus 3 Tmem154 23 108 98 CCDS HistoryNCBI Gene:320782Re-query CCDS DB by CCDS ID:38467.1Re-query CCDS DB by GeneID:320782See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 38467.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107682.1 ENSMUSP00000103310.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107682.1Link to Ensembl Protein Viewer:ENSMUSP00000103310.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107682Re-query CCDS DB by Protein ID:ENSMUSP00000103310
Original member Current member NCBI NM_177260.2 NP_796234.1 Accepted alive Link to Nucleotide Sequence:NM_177260.2Link to Protein Sequence:NP_796234.1Re-query CCDS DB by Nucleotide ID:NM_177260Re-query CCDS DB by Protein ID:NP_796234Link to BLAST:NP_796234.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_796234.1 181 Q8C4Q9-1 181 100% 0 0

Chromosomal Locations for CCDS 38467.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 84666352 84666415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 84684209 84684463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 84684552 84684590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 84689576 84689603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 84690544 84690629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 84692495 84692552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 84701924 84701939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (546 nt):
ATGACCGTGCCCTGTGCTGCGTTGGTCTTGGCCCTGGGGCTCGCGTTTGGTCAATCCAGCCAGGGAAATG
ACGAGGAGTCAGAATACTCAGGACAGAGCATCACAGAAGAAGAAAACTCGGAGGACGAGACGACGAGAAG
TGCTCTGGCTACGGTGACCACAGAAGCATTAGCTGAAAATGTGAATTCTACCCACACCAACGACACCTCA
AACCAGGTGGAATTTATATTAATGGTGGCGATCCCACTGGCTGCGCTGCTCATCCTTCTATTCATGGTTC
TCATTGCGACCTACTTTAAAAGCAAGAGACCTAAGCAAGAGCCTTCTAGCCAAGGATCTCAAAGTGCCTT
GCAGACACATGAACTTGGAGGTGAAACCCTGAAAGTCCCTATTTTTGAAGAGGACACACCCTCTGTTATG
GAAATAGAGATGGAAGAGCTTGATAAATGGATGAACAGCATGAACAGAAACGCCGACTATGAGTGTTTAC
CTACTTTGAAGGAAGAAAAGGAACCAAACCCCAGCCCAAGTGACAATGAATCCTAA

Translation (181 aa):
MTVPCAALVLALGLAFGQSSQGNDEESEYSGQSITEEENSEDETTRSALATVTTEALAENVNSTHTNDTS
NQVEFILMVAIPLAALLILLFMVLIATYFKSKRPKQEPSSQGSQSALQTHELGGETLKVPIFEEDTPSVM
EIEMEELDKWMNSMNRNADYECLPTLKEEKEPNPSPSDNES


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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