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Report for CCDS36577.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36577.1 Public Mus musculus 12 Rapgef5 23 108 98 CCDS HistoryNCBI Gene:217944Re-query CCDS DB by CCDS ID:36577.1Re-query CCDS DB by GeneID:217944See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36577.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109691.3 ENSMUSP00000105313.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109691.3Link to Ensembl Protein Viewer:ENSMUSP00000105313.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000109691Re-query CCDS DB by Protein ID:ENSMUSP00000105313
Original member NCBI NM_175930.5 NP_787126.3 Updated not alive Link to Nucleotide Sequence:NM_175930.5Link to Protein Sequence:NP_787126.3Re-query CCDS DB by Nucleotide ID:NM_175930Re-query CCDS DB by Protein ID:NP_787126
Current member NCBI NM_175930.6 NP_787126.3 Accepted alive Link to Nucleotide Sequence:NM_175930.6Link to Protein Sequence:NP_787126.3Re-query CCDS DB by Nucleotide ID:NM_175930Re-query CCDS DB by Protein ID:NP_787126Link to BLAST:NP_787126.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_787126.3 814 Q8C0Q9-1 814 100% 0 0

Chromosomal Locations for CCDS 36577.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 117527229 117527249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 117575555 117575605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 117577621 117577727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 117581694 117581815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 117584043 117584211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 117595241 117595307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 117613381 117613429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 117647044 117647117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 117658278 117658403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 117688564 117688682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 117689148 117689236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 117709269 117709347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 117714105 117714249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 117715307 117715404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 117718202 117718232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 117719119 117719197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 117721242 117721391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 117725951 117726048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 117728657 117728779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 117730540 117730718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 117739627 117739717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 117742851 117742901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 117744173 117744260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 117748386 117748450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 117753422 117753476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 117755963 117756081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2445 nt):
ATGACCACTGGTGACTGCCAGACTCTCTCAAGAAGAATTTCTAATCCATACCTTGAACATAGTCCTTCTC
AGATTTATGGAGAGAATTCTTCCTGTGCAGGAAGAGCATTAAGGAATATTATTATCCTTCAAGCAGCTGA
CCTGGTAAAGGACAGAGTGAATCTCAAGGGGTTTTACAGGAGAAGCTGTGTGGGGTCAGAGCTGGTCGAC
TGGCTCCTGGAACACTGTCCTTTTGTCCAGTGTAGATCTATGGCCATTGGAGTCTGGCAGCTCCTACTGG
ATATGGGGATTATGTCATCCGTGGACCAACATCTATACTTTCAAGATAATTATGTTTTCTACCAGTTTTC
TTCGGATGAGTGCAGCTACTTGTACTGCGAATTTGAAAGAGAGGAAGAATGGCAGAAGGGAGTGAAGCTA
TTGCTGGAGCTTGTGCATCTCATTCCTGCAAGAGCTGGCATCTGTGACCTGTCTCACCAGAAAACGGAAG
ACTCGGAGGAAAGCAGTGATGAGATTCTTGCTCGGCTAACATCTGCGGTGCAGAGAGAGCTGGCGGCTGT
TATTGCTTTGAAAGCAAGAAAGTCTGCAATTGAGCAAGATGATGAAAACGCTGACAAGCATGTAACCGTG
ACGGAGGCTAACAACGGTCCCGATCCTCAGGCTGGGGTGATGTGCAAGCTTCAAGAGAGAGATGATATCG
GACGTATTGAGCTGGTCCACAAGCTGGCAAGAGAAAACTGTCAGTTTTTACAGACAGAAAAAAAAGAATC
GGAGAAGTTGGAACAGCAAGATGATGAAGTGACGATGGTTCAGGTTAAAGAGCAAGGCCAGAGTGTGCTG
GTGCTGAAGAAAGTAGCAAGCTGTGGCCCAGCCCCCACCTCAGGGAGTGCGGAGAACGACGCGAGATATG
TGGTGGTGTCTGGTACCCCGGAGAAGATCTTGGAGCACCTTTTGAATGACTTGCACCTGGCAGAGGTTCA
GCACAAAGAAACAGAAACACTCCTTGATGACTTCCTCCTCACGTACACCGTATTCATGACAACTGATGAC
TTGTGCCAGGCGCTGCTAAGACACTATTCTGCCAAGAAGTATCAAGGGGAAGAAGAAAACTCAGATGTCC
CTTGTCGGAAGCGCAAGGTCTTACATCTGGTTTCCCAGTGGATTTCTCTGTACAAGGACTGGCTACATGA
AGATGAGCATTCAAAAATGTTTCTAAAGACCATATACAGGAACGTGCTGGATGATGTCTATGAGTACCCG
ATTCTTGAGAAAGAGCTGAAAGAGTTTCAGAAGATACTTGGCGTGTACCGCCGTCACACTGTTGATGAAT
ACTCACCACAGAAGAAGAATAAAGCCCTTTTCCACCAATTCAGTCTTAAGGAGAACTGGCTCCAGCACAG
AGGAACTGTGGCAGAAACAGAGGAAATTTTTTGCCACGTGTATATAACGGAGCACTCCTATATCAGTGTG
AAGGCAAAAGTGTCGAGTACAGCCCAGGAGATCCTGAAGGTCGTGGCCGAGAAGCTGCAGCGTGCCGAAG
AGGATCTGGCTCTGGTAGCCATTACATTCTCTGGAGAAAAGCATGAATTTCAGCCAAATGACTTGGCCAT
TTCCAAATCCCTGGAGGCATCTGGTCGGATATATGTCTACCGAAAAGATCTGGCTGACACTTTGAATCCT
TTGGCAGAAAATGAGGAATCCCAGCAAAGGTCAATGAGGATTTTGGGGATGAACACGTGGGACCTTGCTC
TGGAATTAATGAGTTTTGATTGGAGTCTGTTCAATTCAATCCACGAGCAAGAGCTGATCTACTTCACATT
CAGCAGACAGGGGAACGGAGAGAATACTGTGAACCTCAGCCTTCTGCTCCAGAGATGTAACGAGGTCCAG
CTCTGGGTAGCCACAGAGATTCTGCTCTGCAGCCAGCTAGGCAAGCGCGTGCAGCTGGTGAAAAAATTCA
TCAAGATTGCAGCTCACTGCAAAGCCCAACAGAACCTAAACTCTTTCTTTGCCATCGTGATGGGTCTCAA
CACCGCCTCTGTCAGCCGGCTATCACAGACCTGGGAGAAAATCCCTGGGAAGTTTAAGAAGCTTTTCTCT
GAACTTGAGAGTTTAACGGATCCTTCCCTAAACCACAAAGCCTACAGGGATGCGTTCAAAAAGATGAAGC
CACCAAAAATCCCTTTCATGCCCTTACTGCTTAAAGATGTAACGTTTATTCATGAAGGAAATAAAACATT
CTTGGATAATCTCGTCAATTTTGAAAAGCTGCACATGATTGCAGACACTGTCCGAACCCTGAGACACTGC
AGGACTAACCAGTTTGGAAGTGACGTGTCTCCAAAGGAGCAGCAAGAGCTGAAGTCCTATGTCAACCACC
TGTATGTCATCGACAGCCAGCAAGCCCTGTTCGAGCTCTCTCACAGGCTGGAGCCTCGAGCCTGA

Translation (814 aa):
MTTGDCQTLSRRISNPYLEHSPSQIYGENSSCAGRALRNIIILQAADLVKDRVNLKGFYRRSCVGSELVD
WLLEHCPFVQCRSMAIGVWQLLLDMGIMSSVDQHLYFQDNYVFYQFSSDECSYLYCEFEREEEWQKGVKL
LLELVHLIPARAGICDLSHQKTEDSEESSDEILARLTSAVQRELAAVIALKARKSAIEQDDENADKHVTV
TEANNGPDPQAGVMCKLQERDDIGRIELVHKLARENCQFLQTEKKESEKLEQQDDEVTMVQVKEQGQSVL
VLKKVASCGPAPTSGSAENDARYVVVSGTPEKILEHLLNDLHLAEVQHKETETLLDDFLLTYTVFMTTDD
LCQALLRHYSAKKYQGEEENSDVPCRKRKVLHLVSQWISLYKDWLHEDEHSKMFLKTIYRNVLDDVYEYP
ILEKELKEFQKILGVYRRHTVDEYSPQKKNKALFHQFSLKENWLQHRGTVAETEEIFCHVYITEHSYISV
KAKVSSTAQEILKVVAEKLQRAEEDLALVAITFSGEKHEFQPNDLAISKSLEASGRIYVYRKDLADTLNP
LAENEESQQRSMRILGMNTWDLALELMSFDWSLFNSIHEQELIYFTFSRQGNGENTVNLSLLLQRCNEVQ
LWVATEILLCSQLGKRVQLVKKFIKIAAHCKAQQNLNSFFAIVMGLNTASVSRLSQTWEKIPGKFKKLFS
ELESLTDPSLNHKAYRDAFKKMKPPKIPFMPLLLKDVTFIHEGNKTFLDNLVNFEKLHMIADTVRTLRHC
RTNQFGSDVSPKEQQELKSYVNHLYVIDSQQALFELSHRLEPRA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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