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Report for CCDS51085.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51085.1 Public Mus musculus 3 Lmo4 23 108 98 CCDS HistoryNCBI Gene:16911Re-query CCDS DB by CCDS ID:51085.1Re-query CCDS DB by GeneID:16911See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51085.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000121796.7 ENSMUSP00000113513.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000121796.7Link to Ensembl Protein Viewer:ENSMUSP00000113513.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000121796Re-query CCDS DB by Protein ID:ENSMUSP00000113513
Original member Current member EBI ENSMUST00000120539.7 ENSMUSP00000113840.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000120539.7Link to Ensembl Protein Viewer:ENSMUSP00000113840.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000120539Re-query CCDS DB by Protein ID:ENSMUSP00000113840
Original member Current member EBI ENSMUST00000121112.5 ENSMUSP00000113865.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000121112.5Link to Ensembl Protein Viewer:ENSMUSP00000113865.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000121112Re-query CCDS DB by Protein ID:ENSMUSP00000113865
Original member Current member NCBI NM_001161769.1 NP_001155241.1 Accepted alive Link to Nucleotide Sequence:NM_001161769.1Link to Protein Sequence:NP_001155241.1Re-query CCDS DB by Nucleotide ID:NM_001161769Re-query CCDS DB by Protein ID:NP_001155241Link to BLAST:NP_001155241.1
Original member Current member NCBI NM_001161770.1 NP_001155242.1 Accepted alive Link to Nucleotide Sequence:NM_001161770.1Link to Protein Sequence:NP_001155242.1Re-query CCDS DB by Nucleotide ID:NM_001161770Re-query CCDS DB by Protein ID:NP_001155242Link to BLAST:NP_001155242.1
Original member Current member NCBI NM_010723.3 NP_034853.1 Accepted alive Link to Nucleotide Sequence:NM_010723.3Link to Protein Sequence:NP_034853.1Re-query CCDS DB by Nucleotide ID:NM_010723Re-query CCDS DB by Protein ID:NP_034853Link to BLAST:NP_034853.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001155241.1 165 P61969 165 100% 0 0
NP_001155242.1 165 P61969 165 100% 0 0
NP_034853.1 165 P61969 165 100% 0 0

Chromosomal Locations for CCDS 51085.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 144189297 144189305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144193896 144194051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144194407 144194503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144201813 144202048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (498 nt):
ATGGTGAATCCGGGCAGCAGCTCGCAGCCGCCCCCGGTGACGGCCGGCTCCCTCTCCTGGAAGCGCTGCG
CAGGCTGCGGGGGCAAGATCGCGGACCGCTTTCTGCTCTATGCCATGGACAGCTACTGGCATAGCCGCTG
CCTCAAGTGCTCCTGCTGCCAGGCGCAGCTGGGCGACATTGGCACGTCCTGTTACACCAAGAGCGGCATG
ATCCTTTGCAGAAATGACTACATTAGGTTATTTGGGAATAGCGGTGCTTGCAGTGCCTGTGGACAGTCGA
TTCCTGCAAGTGAGCTCGTCATGAGGGCCCAAGGCAACGTGTATCATCTCAAGTGTTTCACATGTTCTAC
CTGCCGGAATCGCCTGGTCCCGGGAGATCGGTTTCACTACATCAATGGCAGTTTATTTTGTGAACATGAT
AGACCCACAGCCCTCATCAATGGCCATTTGAATTCACTTCAGAGCAATCCACTACTGCCAGACCAGAAGG
TCTGCTGA

Translation (165 aa):
MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGM
ILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD
RPTALINGHLNSLQSNPLLPDQKVC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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