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Report for CCDS28978.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28978.1 Public Mus musculus 17 Strn 23 108 98 CCDS HistoryNCBI Gene:268980Re-query CCDS DB by CCDS ID:28978.1Re-query CCDS DB by GeneID:268980See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28978.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000145910.8 ENSMUSP00000120830.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000145910.8Link to Ensembl Protein Viewer:ENSMUSP00000120830.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000145910Re-query CCDS DB by Protein ID:ENSMUSP00000120830
Original member Current member NCBI NM_011500.3 NP_035630.2 Accepted alive Link to Nucleotide Sequence:NM_011500.3Link to Protein Sequence:NP_035630.2Re-query CCDS DB by Nucleotide ID:NM_011500Re-query CCDS DB by Protein ID:NP_035630Link to BLAST:NP_035630.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035630.2 780 O55106 780 100% 0 0

Chromosomal Locations for CCDS 28978.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 78655490 78655659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78655749 78655835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78656908 78657015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78657884 78658024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78660044 78660211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78661762 78661883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78663061 78663108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78664619 78664794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78667122 78667258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78669751 78669894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78672576 78672686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78677282 78677417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78682828 78682963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78684230 78684397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78687592 78687670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78692394 78692467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78700850 78700953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78736254 78736487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2343 nt):
ATGGACGAGCAGGCGGGGCCCGGCGTCTTCTTCAGCAACAACCACCCGGGAGCTGGCGGTGCTAAGGGGC
TCGGGCCTCTGGCGGAGGCTGCAGCGGCCGGAGACGGAGCGGCTGCGGCGGGGGCGGCCCGAGCTCAGTA
CAGCCTCCCGGGGATCTTGCACTTCCTGCAGCACGAATGGGCCCGCTTCGAGGTGGAGAGAGCCCAGTGG
GAGGTGGAGCGGGCGGAGCTGCAGGCTCAGATTGCTTTCCTTCAGGGGGAGAGGAAAGGACAAGAAAATT
TGAAGAAAGATCTTGTGAGGAGGATCAAAATGCTGGAATATGCTTTGAAGCAGGAAAGAGCCAAATACCA
CAAGTTGAAATATGGGACAGAACTGAATCAGGGAGACATGAAGCCTCCAAGCTATGACTCTGATGAAGGT
AATGAAACAGAGGTGCAGCCACAGCAAAATAGCCAGTTAATGTGGAAACAAGGCCGGCAGCTACTCAGGC
AGTATCTCCAGGAGGTCGGCTACACAGATACTATTCTAGACGTGAAATCCAAGCGTGTGCGGGCATTGTT
GGGCTTTTCAAGTGATGTCACTGACAGGGAGGATGACAAAAACCAGGACTCAGTGATAAATGGCACAGAG
GCTGAAGTTAAAGAGACAGCAATGATTGGAAAATCCGAGCTAACGGATTCTGCCTCTGTGCTGGACAATT
TCAAATTCCTTGAAAGTGCAGCTGCAGATGTCAGTGACGAGGACGAGGACGAGGACACTGATGGAAGAGC
CAAGAGTGTCATTGATACTTCCACAATTGTTAGGAAAAAAGCATTGCCTGATACCAGTGAAGATCGAGAC
ACAAAAGAAGCTCTGAAGGAGTTTGACTTTCTTGTCACATCAGAGGAAGGAGACAACGAATCTAGAAGCG
CAGGCGATGGAACCGACTGGGAAAAGGAAGATCAGTGTCTCACGCCTGAAGCCTGGAATGTGGACCAGGG
AGTGATCTCCAAACTGAAGGAGCAGTACAAAAAGGAGAGGAAGGGGAAGAAGGGGGTGAAGAGGCCCAAT
AGGTCAAAACTACAAGATATGCTTGCTAATTTGAGAGACGTTGATGAACTTCCCTCCTTGCAGCCATCTG
TTGGCTCCCCTTCCAGACCCAGCAGCTCCAGGCTTCCAGAACAGGAGCTCAGTAGGGCAGATGAAGTGGA
AGCGCTGACATTCCCCCCTTCTTCTGGGAAGTCATTTATCATGGGAGCAGACGAAGCCCTTGAGAGCGAG
CTGGGGCTTGGAGAATTAGCAGGCCTCACGGTGGCCAATGAAGCAGACTCACTAGCTTATGATATAGCGA
ATAACAAAGATGCCTTGAGGAAGACGTGGAACCCTAAGTTTACATTAAGGAGTCACTTTGATGGCATCCG
AGCCCTTGCTTTCCACCCCATTGAGCCTGTGTTAATAACAGCCTCAGAGGACCATACGCTGAAAATGTGG
AATCTACAGAAAACAGCCCCAGCCAAAAAGAGTACTTCTCTAGATGTGGAGCCTATCTATACATTCAGGG
CTCACAAAGGCCCGGTGCTGTGTGTGGTCATGAGTAGCAATGGTGAGCAGTGCTACAGCGGCGGGACTGA
CGGGCGGATCCAGAGCTGGAGCACCACCAATCCCAACGTCGATCCCTACGACGCTTACGATCCTTCAGTT
CTAAGAGGCCCTCTGCTGGGCCACACGGACGCGGTATGGGGGCTGGCCTACAGTGCGGCACACCAGCGCT
TGCTCTCCTGCTCAGCAGACGGCACTCTTCGCTTATGGAATACAACTGAGGTTGCTCCAGCACTGAGTGT
ATTTAATGATAACCAAGAGCTGGGAATTCCTGCCTCTGTGGATCTGGTGAGCAGCGACCCGAGCCATATG
GTAGCATCGTTCAGCAAGGGATATACAAGCATCTTTAACATGGAAACACAGCAGCGAGTTCTCACGCTAG
AATCCAATGTTGATTCAACATCCAGTTCTTCCTGCCAAATAAACAGAGTCATCAGCCATCCTACCCTCCC
AATCAGCATCACTGCTCATGAAGACAGGCACATCAAGTTCTACGATAACAATACAGGCAAACTGATCCAC
TCGATGGTGGCCCACCTGGAAGCTGTGACAAGCCTGGCAGTTGACCCGAATGGCCTCTACTTGATGTCTG
GCAGTCATGACTGTTCAATACGCTTATGGAATTTAGAAAGTAAGACATGTATCCAGGAGTTCACAGCTCA
TCGGAAGAAATTTGAAGAATCGATCCACGATGTAGCGTTCCACCCTTCCAAATGCTATATAGCCAGCGCT
GGAGCCGACGCCCTGGCTAAGGTCTTTGTATGA

Translation (780 aa):
MDEQAGPGVFFSNNHPGAGGAKGLGPLAEAAAAGDGAAAAGAARAQYSLPGILHFLQHEWARFEVERAQW
EVERAELQAQIAFLQGERKGQENLKKDLVRRIKMLEYALKQERAKYHKLKYGTELNQGDMKPPSYDSDEG
NETEVQPQQNSQLMWKQGRQLLRQYLQEVGYTDTILDVKSKRVRALLGFSSDVTDREDDKNQDSVINGTE
AEVKETAMIGKSELTDSASVLDNFKFLESAAADVSDEDEDEDTDGRAKSVIDTSTIVRKKALPDTSEDRD
TKEALKEFDFLVTSEEGDNESRSAGDGTDWEKEDQCLTPEAWNVDQGVISKLKEQYKKERKGKKGVKRPN
RSKLQDMLANLRDVDELPSLQPSVGSPSRPSSSRLPEQELSRADEVEALTFPPSSGKSFIMGADEALESE
LGLGELAGLTVANEADSLAYDIANNKDALRKTWNPKFTLRSHFDGIRALAFHPIEPVLITASEDHTLKMW
NLQKTAPAKKSTSLDVEPIYTFRAHKGPVLCVVMSSNGEQCYSGGTDGRIQSWSTTNPNVDPYDAYDPSV
LRGPLLGHTDAVWGLAYSAAHQRLLSCSADGTLRLWNTTEVAPALSVFNDNQELGIPASVDLVSSDPSHM
VASFSKGYTSIFNMETQQRVLTLESNVDSTSSSSCQINRVISHPTLPISITAHEDRHIKFYDNNTGKLIH
SMVAHLEAVTSLAVDPNGLYLMSGSHDCSIRLWNLESKTCIQEFTAHRKKFEESIHDVAFHPSKCYIASA
GADALAKVFV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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