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Report for CCDS27701.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27701.1 Public Mus musculus 15 Pacsin2 23 108 98 CCDS HistoryNCBI Gene:23970Re-query CCDS DB by CCDS ID:27701.1Re-query CCDS DB by GeneID:23970See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27701.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000056177.6 ENSMUSP00000058320.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000056177.6Link to Ensembl Protein Viewer:ENSMUSP00000058320.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000056177Re-query CCDS DB by Protein ID:ENSMUSP00000058320
Original member Current member EBI ENSMUST00000165095.8 ENSMUSP00000130098.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000165095.8Link to Ensembl Protein Viewer:ENSMUSP00000130098.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000165095Re-query CCDS DB by Protein ID:ENSMUSP00000130098
Original member Current member EBI ENSMUST00000171436.7 ENSMUSP00000131504.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171436.7Link to Ensembl Protein Viewer:ENSMUSP00000131504.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000171436Re-query CCDS DB by Protein ID:ENSMUSP00000131504
Original member Current member EBI ENSMUST00000231184.1 ENSMUSP00000155334.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000231184.1Link to Ensembl Protein Viewer:ENSMUSP00000155334.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000231184Re-query CCDS DB by Protein ID:ENSMUSP00000155334
Original member Current member EBI ENSMUST00000230679.1 ENSMUSP00000155481.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000230679.1Link to Ensembl Protein Viewer:ENSMUSP00000155481.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000230679Re-query CCDS DB by Protein ID:ENSMUSP00000155481
Original member NCBI NM_001159509.1 NP_001152981.1 Updated not alive Link to Nucleotide Sequence:NM_001159509.1Link to Protein Sequence:NP_001152981.1Re-query CCDS DB by Nucleotide ID:NM_001159509Re-query CCDS DB by Protein ID:NP_001152981
Current member NCBI NM_001159509.2 NP_001152981.1 Accepted alive Link to Nucleotide Sequence:NM_001159509.2Link to Protein Sequence:NP_001152981.1Re-query CCDS DB by Nucleotide ID:NM_001159509Re-query CCDS DB by Protein ID:NP_001152981Link to BLAST:NP_001152981.1
Original member NCBI NM_001159510.1 NP_001152982.1 Updated not alive Link to Nucleotide Sequence:NM_001159510.1Link to Protein Sequence:NP_001152982.1Re-query CCDS DB by Nucleotide ID:NM_001159510Re-query CCDS DB by Protein ID:NP_001152982
Current member NCBI NM_001159510.2 NP_001152982.1 Accepted alive Link to Nucleotide Sequence:NM_001159510.2Link to Protein Sequence:NP_001152982.1Re-query CCDS DB by Nucleotide ID:NM_001159510Re-query CCDS DB by Protein ID:NP_001152982Link to BLAST:NP_001152982.1
Original member NCBI NM_011862.3 NP_035992.1 Updated not alive Link to Nucleotide Sequence:NM_011862.3Link to Protein Sequence:NP_035992.1Re-query CCDS DB by Nucleotide ID:NM_011862Re-query CCDS DB by Protein ID:NP_035992
Current member NCBI NM_011862.4 NP_035992.1 Accepted alive Link to Nucleotide Sequence:NM_011862.4Link to Protein Sequence:NP_035992.1Re-query CCDS DB by Nucleotide ID:NM_011862Re-query CCDS DB by Protein ID:NP_035992Link to BLAST:NP_035992.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001152981.1 486 Q9WVE8 486 100% 0 0
NP_001152982.1 486 Q9WVE8 486 100% 0 0
NP_035992.1 486 Q9WVE8 486 100% 0 0

Chromosomal Locations for CCDS 27701.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 83377618 83377730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83378999 83379195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83379684 83379806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83381762 83381883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83384987 83385107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83386662 83386837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83388515 83388670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83390423 83390658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83392501 83392657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83401867 83401926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1461 nt):
ATGTCTGTCACCTACGATGACTCTGTGGGAGTGGAAGTGTCCAGCGACAGCTTCTGGGAGGTTGGGAACT
ACAAACGGACTGTGAAGCGGATTGACGATGGCCACCGCCTGTGTGGTGACCTCATGAACTGTCTGCATGA
GCGGGCACGCATCGAGAAGGCGTATGCACAGCAGCTCACTGAGTGGGCCCGACGCTGGAGGCAGCTGGTA
GAGAAGGGACCACAGTATGGGACCGTGGAGAAGGCCTGGATAGCTGTCATGTCTGAAGCAGAGAGGGTGA
GTGAACTGCACCTGGAAGTGAAGGCATCACTGATGAATGAAGACTTTGAGAAGATCAAGAACTGGCAGAA
GGAAGCCTTTCACAAGCAGATGATGGGAGGCTTCAAGGAGACCAAAGAAGCAGAGGATGGCTTTCGGAAG
GCCCAGAAGCCCTGGGCCAAGAAGCTGAAAGAGGTGGAAGCGGCAAAGAAGGCGCACCACACAGCGTGCA
AAGAGGAGAAGCTGGCCATCTCCCGGGAAGCCAACAGCAAGGCAGATCCATCCCTCAACCCTGAGCAGCT
GAAGAAACTGCAAGACAAGATAGAAAAATGCAAACAGGACGTTCTAAAGACCAAGGACAAGTATGAGAAG
TCCCTGAAGGAGCTTGATCAGACCACACCCCAGTACATGGAGAACATGGAGCAGGTGTTCGAGCAGTGCC
AGCAGTTTGAAGAGAAGCGCCTGCGCTTCTTCCGGGAGGTTCTGCTGGAGGTTCAGAAGCACTTGGATCT
GTCCAATGTGGCTAGCTATAAAACCATTTACCGGGAGCTGGAGCAGAGCATCAAAGCAGCAGATGCGGTA
GAGGACCTGAGGTGGTTCCGGGCTAACCATGGGCCAGGCATGGCTATGAACTGGCCACAGTTTGAGGAGT
GGTCTGCAGATCTGAATCGAACTCTCAGCCGGAGAGAGAAGAAGAAGGCTGTTGACGGTGTCACCCTAAC
AGGGATCAACCAGACAGGTGACCAGTCTGGACAGAACAAGCCTGGCAGCAACCTTAGTGTCCCGAGCAAC
CCCGCCCAGTCCACGCAGTTACAGTCCAGCTACAACCCCTTCGAGGACGAGGACGACACGGGCAGCAGCA
TCAGTGAGAAGGAGGACATTAAGGCCAAAAATGTCAGCAGCTATGAGAAGACTCAGACTTACCCCACTGA
CTGGTCTGATGATGAGTCTAACAACCCTTTCTCCTCCACGGATGCCAACGGGGATTCGAACCCATTTGAT
GAGGACACGACCTCAGGAACAGAAGTGCGAGTTCGGGCCCTCTATGACTATGAGGGGCAGGAACATGATG
AGCTGAGCTTCAAGGCTGGGGATGAACTGACCAAGATAGAGGATGAAGATGAACAGGGTTGGTGCAAGGG
ACGTTTAGACAGCGGCCAGGTTGGCCTATACCCAGCCAACTATGTCGAGGCTATCCAGTGA

Translation (486 aa):
MSVTYDDSVGVEVSSDSFWEVGNYKRTVKRIDDGHRLCGDLMNCLHERARIEKAYAQQLTEWARRWRQLV
EKGPQYGTVEKAWIAVMSEAERVSELHLEVKASLMNEDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRK
AQKPWAKKLKEVEAAKKAHHTACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKDKYEK
SLKELDQTTPQYMENMEQVFEQCQQFEEKRLRFFREVLLEVQKHLDLSNVASYKTIYRELEQSIKAADAV
EDLRWFRANHGPGMAMNWPQFEEWSADLNRTLSRREKKKAVDGVTLTGINQTGDQSGQNKPGSNLSVPSN
PAQSTQLQSSYNPFEDEDDTGSSISEKEDIKAKNVSSYEKTQTYPTDWSDDESNNPFSSTDANGDSNPFD
EDTTSGTEVRVRALYDYEGQEHDELSFKAGDELTKIEDEDEQGWCKGRLDSGQVGLYPANYVEAIQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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