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Report for CCDS51871.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51871.1 Public Mus musculus 6 Arpc4 23 108 98 CCDS HistoryNCBI Gene:68089Re-query CCDS DB by CCDS ID:51871.1Re-query CCDS DB by GeneID:68089See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 51871.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000171058.7 ENSMUSP00000131690.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171058.7Link to Ensembl Protein Viewer:ENSMUSP00000131690.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000171058Re-query CCDS DB by Protein ID:ENSMUSP00000131690
Original member Current member NCBI NM_001170485.1 NP_001163956.1 Accepted alive Link to Nucleotide Sequence:NM_001170485.1Link to Protein Sequence:NP_001163956.1Re-query CCDS DB by Nucleotide ID:NM_001170485Re-query CCDS DB by Protein ID:NP_001163956Link to BLAST:NP_001163956.1

Chromosomal Locations for CCDS 51871.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 113378206 113378208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113384082 113384177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113385490 113385660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113388771 113388776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (276 nt):
ATGGCCGATGAAATTGAGAAGATTTTATGCCATAAATTCATGCGCTTCATGATGATGCGAGCAGAGAACT
TCTTTATCCTTCGAAGGAAACCTGTGGAGGGATATGACATCAGCTTTCTCATCACCAACTTCCACACGGA
GCAGATGTACAAACACAAGCTGGTGGACTTTGTAATCCACTTCATGGAGGAGATCGACAAGGAGATCAGT
GAGATGAAGCTGTCGGTCAATGCCCGGGCTCGTATCGTAGCTGAGGAGTTCCTCAAGAATTTTTAA

Translation (91 aa):
MADEIEKILCHKFMRFMMMRAENFFILRRKPVEGYDISFLITNFHTEQMYKHKLVDFVIHFMEEIDKEIS
EMKLSVNARARIVAEEFLKNF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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