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Report for CCDS50050.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50050.1 Public Mus musculus 17 Tmem217 23 108 98 CCDS HistoryNCBI Gene:71138Re-query CCDS DB by CCDS ID:50050.1Re-query CCDS DB by GeneID:71138See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50050.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114683.9 ENSMUSP00000110331.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114683.9Link to Ensembl Protein Viewer:ENSMUSP00000110331.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000114683Re-query CCDS DB by Protein ID:ENSMUSP00000110331
Original member Current member EBI ENSMUST00000168339.2 ENSMUSP00000132463.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000168339.2Link to Ensembl Protein Viewer:ENSMUSP00000132463.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000168339Re-query CCDS DB by Protein ID:ENSMUSP00000132463
Original member Current member EBI ENSMUST00000234979.1 ENSMUSP00000156979.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000234979.1Link to Ensembl Protein Viewer:ENSMUSP00000156979.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000234979Re-query CCDS DB by Protein ID:ENSMUSP00000156979
Original member Current member EBI ENSMUST00000234718.1 ENSMUSP00000157082.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000234718.1Link to Ensembl Protein Viewer:ENSMUSP00000157082.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000234718Re-query CCDS DB by Protein ID:ENSMUSP00000157082
Original member Current member EBI ENSMUST00000235062.1 ENSMUSP00000157370.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000235062.1Link to Ensembl Protein Viewer:ENSMUSP00000157370.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000235062Re-query CCDS DB by Protein ID:ENSMUSP00000157370
Original member Current member NCBI NM_001162901.1 NP_001156373.1 Accepted alive Link to Nucleotide Sequence:NM_001162901.1Link to Protein Sequence:NP_001156373.1Re-query CCDS DB by Nucleotide ID:NM_001162901Re-query CCDS DB by Protein ID:NP_001156373Link to BLAST:NP_001156373.1
Original member Current member NCBI NM_001162902.1 NP_001156374.1 Accepted alive Link to Nucleotide Sequence:NM_001162902.1Link to Protein Sequence:NP_001156374.1Re-query CCDS DB by Nucleotide ID:NM_001162902Re-query CCDS DB by Protein ID:NP_001156374Link to BLAST:NP_001156374.1

Chromosomal Locations for CCDS 50050.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 29526185 29526754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (570 nt):
ATGAAGCATCACAGCTGGTGTGGGTTGACAGCCAGGATGGGCACAGTGTTGTCAGGGGTCTTCTCCATCA
TGGCTACCCACATGCACCTCATCTTTGAAAGGAAACATCTTGGGAACGGCAACTGCACGGAGAACTTCCA
GGCTCAGGGCCTCAACATACTGAGGTACTTCTTCATCTGCTGGAGCTTCCAAATCGTCCTCTTCACGTCC
ATCATCACCATGATAGCCAGCTGCTTCCTCCTGTACTCTGTGTATGCCCAGATATACGAGGGCCTCATGA
GCTACGTCATCTGGATCATCATCTATGAGTCCACCAGCCTGACCGTCCAGACCCTCACCGACGAGTTCAG
TGTGGCCCTGGTCAGAGCCATGCGATGGTTCGGCTGGGTGTCCCGTGCCTCCCTACACTGCTTCTGGCTA
TATTTTGTTGTCACACACGCCCAGATCATCTACCAGAGCAAAAAACAGGGCAACATACTCACTTACCATA
GACGTATCTCTTTGGGAAGCGGAGACCGTCCACGGCGGAAATCAAAGATTATACACTTTGTCCAGCACCA
CAGTGAATAA

Translation (189 aa):
MKHHSWCGLTARMGTVLSGVFSIMATHMHLIFERKHLGNGNCTENFQAQGLNILRYFFICWSFQIVLFTS
IITMIASCFLLYSVYAQIYEGLMSYVIWIIIYESTSLTVQTLTDEFSVALVRAMRWFGWVSRASLHCFWL
YFVVTHAQIIYQSKKQGNILTYHRRISLGSGDRPRRKSKIIHFVQHHSE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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