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Report for CCDS52165.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52165.1 Public Mus musculus 7 Sirt2 23 108 98 CCDS HistoryNCBI Gene:64383Re-query CCDS DB by CCDS ID:52165.1Re-query CCDS DB by GeneID:64383See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52165.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000170068.8 ENSMUSP00000132783.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170068.8Link to Ensembl Protein Viewer:ENSMUSP00000132783.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170068Re-query CCDS DB by Protein ID:ENSMUSP00000132783
Original member NCBI NM_001122766.1 NP_001116238.1 Updated not alive Link to Nucleotide Sequence:NM_001122766.1Link to Protein Sequence:NP_001116238.1Re-query CCDS DB by Nucleotide ID:NM_001122766Re-query CCDS DB by Protein ID:NP_001116238
Current member NCBI NM_001122766.2 NP_001116238.1 Accepted alive Link to Nucleotide Sequence:NM_001122766.2Link to Protein Sequence:NP_001116238.1Re-query CCDS DB by Nucleotide ID:NM_001122766Re-query CCDS DB by Protein ID:NP_001116238Link to BLAST:NP_001116238.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001116238.1 319 Q8VDQ8-4 319 100% 0 0

Chromosomal Locations for CCDS 52165.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 28766852 28766867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28776858 28776899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28776996 28777102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28777191 28777247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28778922 28778990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28782769 28782898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28785380 28785439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28785664 28785719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28785806 28785882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28785965 28786016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28787583 28787653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28787762 28787828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28787917 28788072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (960 nt):
ATGGCCGAGCCGGACCGCCGCAAGGTCATCTGTTTGGTGGGAGCCGGAATCTCCACGTCCGCGGGTATCC
CTGACTTCCGCTCCCCGTCCACTGGCCTCTATGCAAACCTGGAGAAGTACCACCTTCCTTACCCAGAGGC
CATCTTTGAGATCAGCTACTTCAAGAAACATCCGGAACCCTTCTTTGCCCTTGCCAAGGAGCTCTATCCC
GGGCAGTTCAAGCCAACCATCTGCCACTACTTCATCCGCCTGCTGAAGGAGAAGGGGCTGCTGCTGCGCT
GCTACACGCAGAACATAGACACGCTGGAACGAGTGGCGGGGCTGGAGCCCCAGGACCTGGTGGAGGCCCA
CGGCACCTTCTACACATCACACTGTGTCAACACCTCCTGCAGAAAAGAATACACGATGGGCTGGATGAAA
GAGAAGATCTTCTCAGAAGCAACTCCCAGGTGTGAGCAGTGTCAGAGTGTGGTAAAGCCTGATATCGTGT
TTTTCGGTGAGAACCTTCCATCGCGCTTCTTCTCCTGCATGCAGTCAGACTTCTCCAAGGTGGACCTCCT
CATCATCATGGGCACCTCCCTGCAGGTGCAGCCCTTCGCCTCCCTCATCAGCAAGGCACCACTAGCCACC
CCACGGCTGCTCATTAACAAGGAAAAGACAGGCCAGACGGACCCCTTCCTGGGCATGATGATGGGCCTGG
GAGGTGGCATGGATTTTGACTCCAAGAAGGCTTACAGGGACGTGGCCTGGCTGGGTGACTGTGATCAAGG
CTGCCTGGCTCTCGCTGACCTCCTCGGATGGAAGAAGGAACTGGAAGACCTTGTCCGGAGGGAGCATGCC
AACATAGATGCCCAGTCAGGGTCACAGGCCCCCAACCCCAGCACTACCATCTCCCCTGGAAAGTCCCCAC
CGCCTGCCAAGGAGGCGGCCAGGACCAAAGAGAAAGAGGAACAGCAGTAA

Translation (319 aa):
MAEPDRRKVICLVGAGISTSAGIPDFRSPSTGLYANLEKYHLPYPEAIFEISYFKKHPEPFFALAKELYP
GQFKPTICHYFIRLLKEKGLLLRCYTQNIDTLERVAGLEPQDLVEAHGTFYTSHCVNTSCRKEYTMGWMK
EKIFSEATPRCEQCQSVVKPDIVFFGENLPSRFFSCMQSDFSKVDLLIIMGTSLQVQPFASLISKAPLAT
PRLLINKEKTGQTDPFLGMMMGLGGGMDFDSKKAYRDVAWLGDCDQGCLALADLLGWKKELEDLVRREHA
NIDAQSGSQAPNPSTTISPGKSPPPAKEAARTKEKEEQQ


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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