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Report for CCDS35627.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35627.1 Public Mus musculus 1 Epha4 23 108 98 CCDS HistoryNCBI Gene:13838Re-query CCDS DB by CCDS ID:35627.1Re-query CCDS DB by GeneID:13838See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)


Attributes
Nonsense-mediated decay (NMD) candidate

Sequence IDs included in CCDS 35627.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027451.12 ENSMUSP00000027451.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027451.12Link to Ensembl Protein Viewer:ENSMUSP00000027451.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000027451Re-query CCDS DB by Protein ID:ENSMUSP00000027451
Original member Current member EBI ENSMUST00000188952.6 ENSMUSP00000139640.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000188952.6Link to Ensembl Protein Viewer:ENSMUSP00000139640.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000188952Re-query CCDS DB by Protein ID:ENSMUSP00000139640
Original member Current member EBI ENSMUST00000188797.6 ENSMUSP00000140954.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000188797.6Link to Ensembl Protein Viewer:ENSMUSP00000140954.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000188797Re-query CCDS DB by Protein ID:ENSMUSP00000140954
Original member Current member NCBI NM_007936.3 NP_031962.2 Accepted alive Link to Nucleotide Sequence:NM_007936.3Link to Protein Sequence:NP_031962.2Re-query CCDS DB by Nucleotide ID:NM_007936Re-query CCDS DB by Protein ID:NP_031962Link to BLAST:NP_031962.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031962.2 986 Q03137-1 986 100% 0 0

Chromosomal Locations for CCDS 35627.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 77373733 77373847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 77374771 77374926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 77377414 77377607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 77380864 77381013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 77382869 77383078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 77383523 77383584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 77387797 77387982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 77388473 77388586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 77390033 77390091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 77398494 77398605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 77399638 77399797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 77401200 77401324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 77426551 77426889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 77444865 77445020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 77506548 77507211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 77511683 77511750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 77514941 77515031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2961 nt):
ATGGCTGGGATTTTCTATTTCATCCTCTTTTCGTTTCTCTTTGGAATTTGCGACGCTGTCACCGGTTCTA
GGGTATACCCCGCGAATGAAGTTACTTTATTGGATTCCAGATCTGTTCAGGGAGAGCTTGGGTGGATAGC
AAGCCCTCTGGAAGGAGGGTGGGAGGAAGTGAGCATTATGGATGAGAAAAATACACCGATCCGAACCTAC
CAGGTGTGCAACGTGATGGAAGCCAGCCAGAACAACTGGCTGCGAACTGACTGGATCACCCGCGAAGGGG
CGCAGAGGGTGTACATTGAAATTAAGTTCACTCTAAGGGACTGCAACAGTCTTCCGGGCGTCATGGGGAC
TTGCAAGGAGACGTTTAACCTCTACTACTATGAGTCGGACAACGACAAGGAGCGCTTCATCAGAGAGAGC
CAGTTTGGCAAGATCGACACCATCGCAGCTGATGAGAGCTTCACGCAGGTGGACATTGGTGACCGAATCA
TGAAACTCAACACTGAGATCCGGGATGTAGGGCCACTGAGCAAGAAAGGGTTTTACCTGGCTTTTCAGGA
TGTGGGTGCTTGCATCGCCCTGGTGTCTGTCCGTGTGTTCTACAAGAAGTGTCCACTCACCGTTCGAAAT
CTAGCCCAGTTTCCTGATACCATTACTGGGGCTGATACCTCTTCCCTGGTGGAAGTTCGAGGCTCCTGTG
TCAACAACTCAGAAGAGAAGGATGTGCCAAAAATGTACTGTGGGGCAGATGGTGAATGGCTGGTACCCAT
TGGCAACTGCCTATGCAACGCTGGGCACGAGGAGCAGAATGGTGAATGCCAAGCTTGCAAAATTGGATAT
TACAAAGCTCTTTCCACGGACGCCTCCTGTGCCAAGTGTCCACCGCACAGCTACTCTGTCTGGGAAGGAG
CCACGTCCTGCACCTGTGACCGAGGCTTTTTCAGAGCTGACAACGATGCAGCCTCCATGCCCTGCACCCG
CCCACCATCTGCTCCCCTCAACTTGATTTCTAATGTCAACGAGACATCGGTGAACTTGGAATGGAGCAGC
CCTCAGAACACAGGTGGCCGTCAGGACATTTCTTACAACGTGGTCTGCAAGAAATGTGGAGCTGGTGATC
CCAGCAAGTGCCGGCCCTGTGGAAGTGGAGTCCACTACACACCACAGCAGAACGGACTCAAGACGACCAG
AGTCTCCATCACTGACCTCCTAGCACACACCAATTACACGTTTGAGATCTGGGCAGTGAATGGAGTGTCT
AAGTATAACCCTAGCCCGGACCAGTCCGTGTCTGTCACAGTGACAACCAACCAAGCAGCACCATCATCCA
TTGCTTTGGTCCAGGCTAAAGAAGTTACAAGATATAGCGTAGCTCTGGCTTGGCTGGAACCAGATCGACC
AAATGGAGTCATCTTAGAATATGAAGTCAAATATTATGAAAAGGATCAGAATGAACGCAGCTATCGCATA
GTCCGGACAGCTGCCAGGAACACAGATATCAAAGGCCTGAACCCTCTGACTTCCTATGTTTTTCACGTGC
GAGCCAGGACCGCTGCTGGCTACGGAGACTTCAGCGAGCCCCTGGAAGTCACTACTAATACAGTGCCTTC
CCGCATCATTGGCGATGGAGCCAACTCCACTGTCCTGCTGGTCTCCGTCTCTGGCAGTGTGGTCCTCGTG
GTCATTCTCATTGCAGCTTTTGTGATCAGCCGAAGACGGAGTAAGTACAGCAAAGCGAAACAAGAAGCAG
ATGAAGAGAAACATTTGAATCAAGGTGTTAGAACTTATGTGGATCCCTTTACATACGAAGACCCCAACCA
GGCAGTTCGAGAATTTGCCAAAGAAATCGATGCATCCTGCATTAAAATTGAAAAGGTCATAGGAGTTGGT
GAATTTGGAGAGGTCTGCAGTGGGCGTCTCAAAGTGCCCGGCAAGAGAGAGATCTGTGTGGCCATCAAGA
CTCTGAAAGCTGGCTATACTGACAAGCAGAGGAGAGACTTCCTGAGTGAGGCCAGCATCATGGGACAGTT
TGACCACCCAAACATAATCCACCTGGAAGGCGTTGTCACCAAATGTAAACCGGTAATGATCATAACGGAG
TACATGGAGAACGGCTCCTTGGATGCTTTCCTCAGGAAGAATGATGGCCGCTTTACAGTCATTCAGCTGG
TGGGCATGCTCCGGGGCATTGGCTCGGGGATGAAGTACTTATCTGATATGAGCTATGTGCATCGAGACCT
GGCTGCCAGGAACATCCTGGTAAACAGCAACTTGGTCTGCAAGGTGTCTGACTTTGGCATGTCCAGGGTG
CTGGAGGATGACCCCGAAGCAGCCTACACTACCAGGGGTGGCAAGATTCCTATCCGGTGGACTGCGCCAG
AAGCAATTGCGTATCGTAAATTTACCTCAGCCAGTGATGTCTGGAGCTACGGAATCGTTATGTGGGAAGT
GATGTCATATGGAGAGAGACCGTACTGGGATATGTCCAATCAAGATGTGATCAAAGCCATCGAGGAAGGG
TACCGGCTACCCCCTCCAATGGACTGCCCCATTGCCCTCCATCAGTTAATGCTGGACTGCTGGCAGAAAG
AGAGAAGTGACAGGCCTAAATTTGGGCAGATCGTCAACATGCTGGACAAACTCATCCGCAATCCCAACAG
CCTGAAGAGGACAGGGTCGGAGAGTTCCAGACCAAACACAGCCTTGTTAGATCCCAGCTCCCCTGAATTC
TCTGCTGTAGTATCAGTGGGCGACTGGCTGCAGGCCATCAAAATGGACCGGTATAAGGACAACTTCACGG
CCGCCGGGTACACGACACTAGAAGCCGTGGTTCACATGAGCCAGGACGACCTGGCGAGAATTGGCATCAC
CGCCATCACGCACCAGAATAAGATTTTGAGCAGCGTCCAGGCGATGCGAACCCAGATGCAGCAGATGCAT
GGCAGGATGGTTCCTGTCTGA

Translation (986 aa):
MAGIFYFILFSFLFGICDAVTGSRVYPANEVTLLDSRSVQGELGWIASPLEGGWEEVSIMDEKNTPIRTY
QVCNVMEASQNNWLRTDWITREGAQRVYIEIKFTLRDCNSLPGVMGTCKETFNLYYYESDNDKERFIRES
QFGKIDTIAADESFTQVDIGDRIMKLNTEIRDVGPLSKKGFYLAFQDVGACIALVSVRVFYKKCPLTVRN
LAQFPDTITGADTSSLVEVRGSCVNNSEEKDVPKMYCGADGEWLVPIGNCLCNAGHEEQNGECQACKIGY
YKALSTDASCAKCPPHSYSVWEGATSCTCDRGFFRADNDAASMPCTRPPSAPLNLISNVNETSVNLEWSS
PQNTGGRQDISYNVVCKKCGAGDPSKCRPCGSGVHYTPQQNGLKTTRVSITDLLAHTNYTFEIWAVNGVS
KYNPSPDQSVSVTVTTNQAAPSSIALVQAKEVTRYSVALAWLEPDRPNGVILEYEVKYYEKDQNERSYRI
VRTAARNTDIKGLNPLTSYVFHVRARTAAGYGDFSEPLEVTTNTVPSRIIGDGANSTVLLVSVSGSVVLV
VILIAAFVISRRRSKYSKAKQEADEEKHLNQGVRTYVDPFTYEDPNQAVREFAKEIDASCIKIEKVIGVG
EFGEVCSGRLKVPGKREICVAIKTLKAGYTDKQRRDFLSEASIMGQFDHPNIIHLEGVVTKCKPVMIITE
YMENGSLDAFLRKNDGRFTVIQLVGMLRGIGSGMKYLSDMSYVHRDLAARNILVNSNLVCKVSDFGMSRV
LEDDPEAAYTTRGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDMSNQDVIKAIEEG
YRLPPPMDCPIALHQLMLDCWQKERSDRPKFGQIVNMLDKLIRNPNSLKRTGSESSRPNTALLDPSSPEF
SAVVSVGDWLQAIKMDRYKDNFTAAGYTTLEAVVHMSQDDLARIGITAITHQNKILSSVQAMRTQMQQMH
GRMVPV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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